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IVF0006678 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006678
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18831609..18832442
RNA-Seq ExpressionIVF0006678
SyntenyIVF0006678
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.56e-3553.29Show/hide
Query:  MLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREV
        MLP SGER  DVRNHWKC CSE  GLSSR  G   KKTR RM  TQFSRP VKSD P +S+LCFVL IS+SIFEA T RT+ HT GMLPDTF QG    V
Subjt:  MLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREV

Query:  SSLEGKLRCDPKCFQRDHFQGFLTPDQCSPLVGSIGHLSDRFGLHLSSPSNE
                         + +GFLTP +     G   HL  R G   ++PS  
Subjt:  SSLEGKLRCDPKCFQRDHFQGFLTPDQCSPLVGSIGHLSDRFGLHLSSPSNE

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]6.70e-5362.13Show/hide
Query:  MPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSER
        MPRTQFS  R          F  VLVISLSIF A   RTSTH   MLP+MF++ IGREASSLEGEL  D KR K WPML  SGER S VRNHWKCTCS  
Subjt:  MPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSER

Query:  KGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTF
          LSSR  GV   KTR RMSRTQFSRP  KSD P +S+LC VLVIS+SIF A T RT+  T+ +L + F
Subjt:  KGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTF

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.39e-6953.44Show/hide
Query:  EGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN--------------------------
        E NGLSSK S   P K  ARMPRTQFS     SG PTVSS C VLVISLSIFGA   RTSTH   MLP+ FS                            
Subjt:  EGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN--------------------------

Query:  -----------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKS
                               + REASSLE EL CD KR+K WPM P +GERSS VRNHWKCTCSE  GL+SR  G   KKTR RM R+QFSR   KS
Subjt:  -----------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKS

Query:  DLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPKCFQR
        D P +S+LCFVLVI++SIFEA T RT+ HT GMLPD F +GIG+E SSLEG+L C+PK  +R
Subjt:  DLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPKCFQR

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]3.41e-4750.95Show/hide
Query:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN-----
        ML TS E SSGVRN  K TC EGNGLSS+TSG  PKK  ARMP+TQFS     S  PTVS+ C VLV SLSIFGA  PRTSTH P MLP+ FS       
Subjt:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN-----

Query:  -------------------------------------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSS
                                                         IGREASSLEGEL CD K +K WPMLP  GERSS  RNHWKCTCSE  GLSS
Subjt:  -------------------------------------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSS

Query:  RNFGVHHKKT
        R  G   +KT
Subjt:  RNFGVHHKKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.82e-5547.71Show/hide
Query:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREA
        MLQTS E SSGVRN+ K TCSE N L S+TS VCPKK LARMP+TQF                              PRT TH P MLP+ FS+ IGREA
Subjt:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREA

Query:  SSLEGELRCDSKRT--------------------------------KSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRP
        SSLEGEL+C+ KR+                                K WPMLP SGERSS VRNHWKCTCSE   LSSR FG   KKT  R  + QFS  
Subjt:  SSLEGELRCDSKRT--------------------------------KSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRP

Query:  WVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPK
         VKS  P +S+L  + +I + +F A     + HT  ML  T   GIGRE SSLE +L CDPK
Subjt:  WVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPK

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein3.9e-4262.13Show/hide
Query:  MPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSER
        MPRTQFS  R          F  VLVISLSIF A   RTSTH   MLP+MF++ IGREASSLEGEL  D KR K WPML  SGER S VRNHWKCTCS  
Subjt:  MPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSER

Query:  KGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTF
          LSSR  GV   KTR RMSRTQFSRP  KSD P +S+LC VLVIS+SIF A T RT+  T+ +L + F
Subjt:  KGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.4e-6053.44Show/hide
Query:  EGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN--------------------------
        E NGLSSK S   P K  ARMPRTQFS     SG PTVSS C VLVISLSIFGA   RTSTH   MLP+ FS                            
Subjt:  EGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRN--------------------------

Query:  -----------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKS
                               + REASSLE EL CD KR+K WPM P +GERSS VRNHWKCTCSE  GL+SR  G   KKTR RM R+QFSR   KS
Subjt:  -----------------------IGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKS

Query:  DLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPKCFQR
        D P +S+LCFVLVI++SIFEA T RT+ HT GMLPD F +GIG+E SSLEG+L C+PK  +R
Subjt:  DLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPKCFQR

A0A5D3CQ36 Putative nuclease HARBI19.3e-2871.58Show/hide
Query:  MLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQG
        MLP SGER  DVRNHWKC CSE  GLSSR  G   KKTR RM  TQFSRP VKSD P +S+LCFVL IS+SIFEA T RT+ HT GMLPDTF QG
Subjt:  MLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQG

A0A5D3DFP2 Uncharacterized protein2.1e-4050.95Show/hide
Query:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSR------
        ML TS E SSGVRN  K TC EGNGLSS+TSG  PKK  ARMP+TQFS     S  PTVS+ C VLV SLSIFGA  PRTSTH P MLP+ FS       
Subjt:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSR------

Query:  ------------------------------------------------NIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSS
                                                         IGREASSLEGEL CD K +K WPMLP  GERSS  RNHWKCTCSE  GLSS
Subjt:  ------------------------------------------------NIGREASSLEGELRCDSKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSS

Query:  RNFGVHHKKT
        R  G   +KT
Subjt:  RNFGVHHKKT

A0A5D3DIF8 Gag/pol protein1.1e-4747.71Show/hide
Query:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREA
        MLQTS E SSGVRN+ K TCSE N L S+TS VCPKK LARMP+TQF                              PRT TH P MLP+ FS+ IGREA
Subjt:  MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREA

Query:  SSLEGELRCDSKR--------------------------------TKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRP
        SSLEGEL+C+ KR                                +K WPMLP SGERSS VRNHWKCTCSE   LSSR FG   KKT  R  + QFS  
Subjt:  SSLEGELRCDSKR--------------------------------TKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRP

Query:  WVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPK
         VKS  P +S+L  + +I + +F A     + HT  ML  T   GIGRE SSLE +L CDPK
Subjt:  WVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSSLEGKLRCDPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAAACGAGTGACGAACACTCGTCCGGTGTGAGAAACCACAAAAAATACACTTGTAGCGAAGGAAACGGTCTGAGCTCGAAGACTTCTGGTGTTTGTCCCAAGAA
AATTTTGGCGAGAATGCCCCGGACTCAATTTTCTTGTCTTCGGGTAAACAGCGGTGCGCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCATCAGTCTTTCGATCTTCG
GGGCTCATGCTCCGAGGACTTCAACCCATGCTCCTATCATGCTCCCTAACATGTTTTCCCGAAATATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGCGAC
TCAAAACGGACCAAAAGTTGGCCAATGCTTCCAAGGAGTGGCGAGCGATCGTCCGATGTCAGAAACCATTGGAAATGCACTTGTAGCGAAAGAAAAGGGCTGAGCTCGAG
GAATTTTGGTGTTCATCACAAGAAAACGCGAACGAGAATGTCTCGGACTCAGTTTTCTCGTCCTTGGGTAAAAAGCGATCTCCCGAAAATTTCTACCCTTTGCTTCGTAT
TGGTCATAAGTGTTTCGATCTTCGAAGCTCATACTTCGAGGACTGCAGCCCACACTCATGGCATGCTCCCTGACACGTTTTGCCAAGGTATAGGTCGGGAAGTGAGCTCG
TTAGAGGGAAAACTGAGATGCGACCCAAAATGCTTTCAACGAGATCATTTTCAGGGATTTCTGACACCGGACCAGTGTTCGCCACTCGTTGGAAGCATTGGCCATCTTTC
GGATCGTTTTGGGTTGCACCTCAGTTCTCCCTCCAACGAGCTCCCTTCTCGACCTATACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAAACGAGTGACGAACACTCGTCCGGTGTGAGAAACCACAAAAAATACACTTGTAGCGAAGGAAACGGTCTGAGCTCGAAGACTTCTGGTGTTTGTCCCAAGAA
AATTTTGGCGAGAATGCCCCGGACTCAATTTTCTTGTCTTCGGGTAAACAGCGGTGCGCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCATCAGTCTTTCGATCTTCG
GGGCTCATGCTCCGAGGACTTCAACCCATGCTCCTATCATGCTCCCTAACATGTTTTCCCGAAATATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGCGAC
TCAAAACGGACCAAAAGTTGGCCAATGCTTCCAAGGAGTGGCGAGCGATCGTCCGATGTCAGAAACCATTGGAAATGCACTTGTAGCGAAAGAAAAGGGCTGAGCTCGAG
GAATTTTGGTGTTCATCACAAGAAAACGCGAACGAGAATGTCTCGGACTCAGTTTTCTCGTCCTTGGGTAAAAAGCGATCTCCCGAAAATTTCTACCCTTTGCTTCGTAT
TGGTCATAAGTGTTTCGATCTTCGAAGCTCATACTTCGAGGACTGCAGCCCACACTCATGGCATGCTCCCTGACACGTTTTGCCAAGGTATAGGTCGGGAAGTGAGCTCG
TTAGAGGGAAAACTGAGATGCGACCCAAAATGCTTTCAACGAGATCATTTTCAGGGATTTCTGACACCGGACCAGTGTTCGCCACTCGTTGGAAGCATTGGCCATCTTTC
GGATCGTTTTGGGTTGCACCTCAGTTCTCCCTCCAACGAGCTCCCTTCTCGACCTATACTTTGA
Protein sequenceShow/hide protein sequence
MLQTSDEHSSGVRNHKKYTCSEGNGLSSKTSGVCPKKILARMPRTQFSCLRVNSGAPTVSSFCFVLVISLSIFGAHAPRTSTHAPIMLPNMFSRNIGREASSLEGELRCD
SKRTKSWPMLPRSGERSSDVRNHWKCTCSERKGLSSRNFGVHHKKTRTRMSRTQFSRPWVKSDLPKISTLCFVLVISVSIFEAHTSRTAAHTHGMLPDTFCQGIGREVSS
LEGKLRCDPKCFQRDHFQGFLTPDQCSPLVGSIGHLSDRFGLHLSSPSNELPSRPIL