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IVF0006680 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006680
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:15649593..15650305
RNA-Seq ExpressionIVF0006680
SyntenyIVF0006680
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035766.1 hypothetical protein E6C27_scaffold403G00440 [Cucumis melo var. makuwa]1.18e-1041.82Show/hide
Query:  AKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEF-KERKLNVEISSREYQT-KAKVFNVENQAKSTANKKEKR--EVWIEKAKKLMHAND
        AK  VKIHGSF RQ AIEFD+FNS+ EQF+F G+LAI P KF+  +   L  E+++ E  T   K+++ +    S  N K  +  E W+EK   +  +ND
Subjt:  AKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEF-KERKLNVEISSREYQT-KAKVFNVENQAKSTANKKEKR--EVWIEKAKKLMHAND

Query:  DSFDKGENSI
        +     E+S 
Subjt:  DSFDKGENSI

KAA0035947.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.84e-9588.24Show/hide
Query:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN
        VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN
Subjt:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN

Query:  SIHARMDECKRNRK----------------------TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
        SIHARMDECKRNRK                      TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
Subjt:  SIHARMDECKRNRK----------------------TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV

KAA0040711.1 hypothetical protein E6C27_scaffold529G00320 [Cucumis melo var. makuwa]1.12e-0936.07Show/hide
Query:  MTDLLEAKIKVKI-----HGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKER-KLNVEISSREYQTKAKVFNVENQAKSTANKKEK--REVWIE
        MT+LL A IK++       GSF RQAA++F+EFN   EQ+ FI   AI PK  + K +  +N +++     T AK  N +  +KS ++      +  W+E
Subjt:  MTDLLEAKIKVKI-----HGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKER-KLNVEISSREYQTKAKVFNVENQAKSTANKKEK--REVWIE

Query:  KAKKLMHANDDSFDKGENSIHA
        K K LM A++++  K  +S+H+
Subjt:  KAKKLMHANDDSFDKGENSIHA

KAA0045526.1 hypothetical protein E6C27_scaffold243G00120 [Cucumis melo var. makuwa]3.88e-1047.62Show/hide
Query:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEIS-SREYQTKAKVFNVENQAKST------ANKKEKR
        VKIHGSF R+ AI+FD+FN + EQ+ FIGN A+PP+K + K + +  E+S S E  T AK+ + +    S       ANKKEKR
Subjt:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEIS-SREYQTKAKVFNVENQAKST------ANKKEKR

TYK30452.1 hypothetical protein E5676_scaffold349G00750 [Cucumis melo var. makuwa]4.74e-11388.83Show/hide
Query:  MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA
        MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA
Subjt:  MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA

Query:  NDDSFDKGENSIHARMDECKRNRK----------------------TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
        NDDSFDKGENSIHARMDECKRNRK                      TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
Subjt:  NDDSFDKGENSIHARMDECKRNRK----------------------TGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV

TrEMBL top hitse value%identityAlignment
A0A5A7T0M9 DUF4283 domain-containing protein8.0e-0942.2Show/hide
Query:  AKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEF-KERKLNVEISSREYQT-KAKVFNVENQAKSTANKKEKR--EVWIEKAKKLMHAND
        AK  VKIHGSF RQ AIEFD+FNS+ EQF+F G+LAI P KF+  +   L  E+++ E  T   K+++ +    S  N K  +  E W+EK   +  +ND
Subjt:  AKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEF-KERKLNVEISSREYQT-KAKVFNVENQAKSTANKKEKR--EVWIEKAKKLMHAND

Query:  DSFDKGENS
        +     E+S
Subjt:  DSFDKGENS

A0A5A7T2Z4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-8188.24Show/hide
Query:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN
        VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN
Subjt:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN

Query:  SIHARMDECKRNR----------------------KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
        SIHARMDECKRNR                      KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
Subjt:  SIHARMDECKRNR----------------------KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV

A0A5A7TGC4 Uncharacterized protein1.5e-0734.92Show/hide
Query:  MTDLLEAKIKVK-----IHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKER-KLNVEISSREYQTKAKVFNVENQAKSTANKKE--KREVWIE
        MT+LL A IK++       GSF RQAA++F+EFN   EQ+ FI   AI PK  + K +  +N +++     T AK  N +  +KS ++      +  W+E
Subjt:  MTDLLEAKIKVK-----IHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKER-KLNVEISSREYQTKAKVFNVENQAKSTANKKE--KREVWIE

Query:  KAKKLMHANDDSFDKGENSIHARMDE
        K K LM A++++  K  +S+H+  ++
Subjt:  KAKKLMHANDDSFDKGENSIHARMDE

A0A5D3BSG0 Uncharacterized protein5.2e-0847.06Show/hide
Query:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEIS-SREYQTKAKVFNVENQAKS------TANKKEKRE
        VKIHGSF R+ AI+FD+FN + EQ+ FIGN A+PP+K + K + +  E+S S E  T AK+ + +    S       ANKKEKR+
Subjt:  VKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEIS-SREYQTKAKVFNVENQAKS------TANKKEKRE

A0A5D3E3I9 Uncharacterized protein4.3e-8788.83Show/hide
Query:  MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA
        MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA
Subjt:  MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHA

Query:  NDDSFDKGENSIHARMDECKRNR----------------------KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
        NDDSFDKGENSIHARMDECKRNR                      KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV
Subjt:  NDDSFDKGENSIHARMDECKRNR----------------------KTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGACCTCTTGGAGGCAAAAATCAAAGTCAAGATTCACGGCTCTTTCAACAGACAAGCTGCAATCGAGTTTGATGAGTTCAACTCGGAGTGTGAACAGTTCTCCTT
CATCGGAAACTTGGCGATACCACCTAAAAAATTTGAATTCAAAGAAAGGAAATTAAATGTTGAGATCTCATCTAGAGAGTATCAAACAAAAGCCAAGGTTTTTAATGTGG
AGAATCAAGCTAAATCTACTGCCAACAAGAAAGAGAAGAGAGAAGTGTGGATAGAGAAAGCTAAAAAATTAATGCATGCCAATGATGACTCCTTTGATAAAGGTGAAAAT
TCAATTCATGCAAGAATGGATGAGTGCAAAAGAAATAGAAAAACGGGACCATCAAAGCAAATCATGATGGAGGATGCGATGGATATAGATAATGACAGTATCCAGAAGAT
CCCAGCTCCTCCCATTAAAAGCATACAAAGCAAAATTTGCAAAGAAAAAGAGGATTTCAATGCAGAGAAAGAAGATCTTCAAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGACCTCTTGGAGGCAAAAATCAAAGTCAAGATTCACGGCTCTTTCAACAGACAAGCTGCAATCGAGTTTGATGAGTTCAACTCGGAGTGTGAACAGTTCTCCTT
CATCGGAAACTTGGCGATACCACCTAAAAAATTTGAATTCAAAGAAAGGAAATTAAATGTTGAGATCTCATCTAGAGAGTATCAAACAAAAGCCAAGGTTTTTAATGTGG
AGAATCAAGCTAAATCTACTGCCAACAAGAAAGAGAAGAGAGAAGTGTGGATAGAGAAAGCTAAAAAATTAATGCATGCCAATGATGACTCCTTTGATAAAGGTGAAAAT
TCAATTCATGCAAGAATGGATGAGTGCAAAAGAAATAGAAAAACGGGACCATCAAAGCAAATCATGATGGAGGATGCGATGGATATAGATAATGACAGTATCCAGAAGAT
CCCAGCTCCTCCCATTAAAAGCATACAAAGCAAAATTTGCAAAGAAAAAGAGGATTTCAATGCAGAGAAAGAAGATCTTCAAGTCTAG
Protein sequenceShow/hide protein sequence
MTDLLEAKIKVKIHGSFNRQAAIEFDEFNSECEQFSFIGNLAIPPKKFEFKERKLNVEISSREYQTKAKVFNVENQAKSTANKKEKREVWIEKAKKLMHANDDSFDKGEN
SIHARMDECKRNRKTGPSKQIMMEDAMDIDNDSIQKIPAPPIKSIQSKICKEKEDFNAEKEDLQV