; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0006724 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006724
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr07:18373760..18375869
RNA-Seq ExpressionIVF0006724
SyntenyIVF0006724
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062951.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa]2.39e-9099.28Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_004147752.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]1.28e-8595.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]8.34e-91100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]4.46e-8695.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.28e-8594.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXH3 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic1.2e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5A7VB86 Photosystem II 10 kDa polypeptide, chloroplastic2.7e-6899.28Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic1.2e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic4.8e-6595.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.2e-5783.45Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSLAR+S+SFKVVASG KK+KTDKPYGINGSM LRDGVDASGRKPKGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic4.0e-5380Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDGVDASGRK KG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S +GDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic1.2e-5280.14Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNS-ASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK SARGLPSL R S +SF++VASG KKIKTDKP+G+NGSM+LRDGVDASGRK KG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNS-ASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS +GDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.6e-5782.73Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSL R+S+SFKVVASG KK+KTDKPYGINGSM LRDGVDASGRKPKGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic7.8e-5782.73Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK+A +GLPSLAR+S+SF+V ASG KK+KTDKPYGINGSM+LRDGVDASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R2.9e-5480Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDGVDASGRK KG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S +GDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCAGTGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGT
CGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGGAAAGG
GAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGTCCCATCTACGATACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACT
GGTTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
CACGTGTCGCCCTACCAATCACACTTCTCAGATTATCAAGCTCTGAGTTCCGTTTTGCGCCATTGCAAATTTTCGAGCTAGAGAAGAAGAAGAAGAAGAAGAAGCTTATC
GATCGGAAATGGCGGCCTCAGTGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCC
TTCAAGGTCGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAA
GGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGTCCCATCTACGATACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTG
GTACTACTGGTTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAAGGTGGAGGGAAAGTT
AAAAGTCTTGTTTTTTCTTCACATTAGTTTTTGTAGCATGTTATTATTATGAACATACATTATTATTAAGAAATTCTGTGTGTAATTATCTGGATAATTGCTTCATAAAT
GCTTGGTAAGATAATTCTTCTCGTTCCCATCTTTTATCTTCTTGTTTTTTTCCTTTACTTTGTATATTAGGGTTGGCACCGAGTTTGAAATCACCTTTTGGATATAGTAC
TATTTTAAG
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALVQ