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IVF0006728 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006728
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr01:11371916..11372335
RNA-Seq ExpressionIVF0006728
SyntenyIVF0006728
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026125.1 hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa]8.25e-3048.92Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS
        MA   FLA+AKE ++++KLIDAKIKVRYNYTGFVPA ++ITDD                                            EVYTYN FQA+P 
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS

Query:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         TTKSRG Y++L+SDKHS+SN TQ KK++SS+ EYDPFD
Subjt:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

KAA0040385.1 hypothetical protein E6C27_scaffold3125G00090 [Cucumis melo var. makuwa]3.12e-3753.96Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS
        M CG FLAVAKET+++ KLIDAKIKVRYNYTGFVPA +VITDD                                            EVYTYNGFQA P 
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS

Query:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         TTKSRG YN+L+SDKHS+SNPTQ KK++SS+SEYD FD
Subjt:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.16e-2747.1Show/hide
Query:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV
        ACG FL VAKET+++DKLIDAKIKVRYNYTGFVPA ++ITD+                                            E YTYNGFQA+P  
Subjt:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV

Query:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         T++ G Y+  +SDKHS+S  TQ KK++SS+SEYDPFD
Subjt:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.39e-2646.38Show/hide
Query:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV
        ACG FL VAKET+++DKLIDAKIKVRYNY GFVPA ++ITD+                                            E YTYNGFQA+P  
Subjt:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV

Query:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         T++ G Y+  +SDKHS+S  TQ KK++SS+SEYDPFD
Subjt:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

TYK23050.1 hypothetical protein E5676_scaffold142G00150 [Cucumis melo var. makuwa]1.63e-4279.21Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-----LEVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF
        MACGDFLAVAKETLELDKLIDAKIKV     G          D      EVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-----LEVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF

Query:  D
        D
Subjt:  D

TrEMBL top hitse value%identityAlignment
A0A5A7SNW5 Uncharacterized protein1.4e-2348.92Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS
        MA   FLA+AKE ++++KLIDAKIKVRYNYTGFVPA ++ITDD                                            EVYTYN FQA+P 
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS

Query:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         TTKSRG Y++L+SDKHS+SN TQ KK++SS+ EYDPFD
Subjt:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

A0A5A7TG40 Uncharacterized protein1.2e-2753.96Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS
        M CG FLAVAKET+++ KLIDAKIKVRYNYTGFVPA +VITDD                                            EVYTYNGFQA P 
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPS

Query:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         TTKSRG YN+L+SDKHS+SNPTQ KK++SS+SEYD FD
Subjt:  VTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein2.9e-2146.38Show/hide
Query:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV
        ACG FL VAKET+++DKLIDAKIKVRYNY GFVPA ++ITD+                                            E YTYNGFQA+P  
Subjt:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV

Query:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         T++ G Y+  +SDKHS+S  TQ KK++SS+SEYDPFD
Subjt:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein5.9e-2247.1Show/hide
Query:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV
        ACG FL VAKET+++DKLIDAKIKVRYNYTGFVPA ++ITD+                                            E YTYNGFQA+P  
Subjt:  ACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-------------------------------------------LEVYTYNGFQAVPSV

Query:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD
         T++ G Y+  +SDKHS+S  TQ KK++SS+SEYDPFD
Subjt:  TTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD

A0A5D3DI32 Uncharacterized protein1.4e-3179.21Show/hide
Query:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-----LEVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF
        MACGDFLAVAKETLELDKLIDAKIKV     G          D      EVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF
Subjt:  MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDD-----LEVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPF

Query:  D
        D
Subjt:  D

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGTGGGGACTTTCTTGCAGTGGCAAAAGAAACCTTGGAGTTGGATAAACTCATTGATGCCAAGATTAAAGTTAGGTATAATTATACAGGTTTTGTACCAGCTTT
TGTAGTAATCACTGATGATCTCGAGGTCTACACCTACAATGGTTTCCAAGCAGTCCCATCAGTAACAACCAAGTCACGCGGTGGTTACAATCACCTCAGTTCTGACAAAC
ATTCTCTTTCAAATCCCACACAAACCAAGAAAGACAGTTCATCAGACTCCGAATATGATCCTTTCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGTGGGGACTTTCTTGCAGTGGCAAAAGAAACCTTGGAGTTGGATAAACTCATTGATGCCAAGATTAAAGTTAGGTATAATTATACAGGTTTTGTACCAGCTTT
TGTAGTAATCACTGATGATCTCGAGGTCTACACCTACAATGGTTTCCAAGCAGTCCCATCAGTAACAACCAAGTCACGCGGTGGTTACAATCACCTCAGTTCTGACAAAC
ATTCTCTTTCAAATCCCACACAAACCAAGAAAGACAGTTCATCAGACTCCGAATATGATCCTTTCGACTAG
Protein sequenceShow/hide protein sequence
MACGDFLAVAKETLELDKLIDAKIKVRYNYTGFVPAFVVITDDLEVYTYNGFQAVPSVTTKSRGGYNHLSSDKHSLSNPTQTKKDSSSDSEYDPFD