CuGenDBv2

Gene ID	IVF0006757
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:5886991..5887316
RNA-Seq Expression	IVF0006757
Synteny	IVF0006757
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

3.40e-45

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYI FDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
         ICELKK
Subjt:  KICELKK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.81e-46

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.12e-46

78.5

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYI+LLLYVDDMILVSKDY 
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

9.78e-46

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.82e-46

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

9.4e-38

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYI FDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
         ICELKK
Subjt:  KICELKK

A0A5A7UB25 Putative gag-pol polyprotein

3.2e-38

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

5.0e-39

78.5

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYI+LLLYVDDMILVSKDY 
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

A0A5D3CTV2 Putative polyprotein

3.2e-38

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

A0A5D3DNU1 Putative gag-pol polyprotein

3.2e-38

77.57

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILKQGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELKK
        +ICELKK
Subjt:  KICELKK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-16

41.51

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Query:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA
        ++V   FLHG+LEE IYM QP+G+ V GK+ M                 WY++FD+F+  Q + +   D CVY+K   +  +I LLLYVDDM++V KD  
Subjt:  MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYA

Query:  KICELK
         I +LK
Subjt:  KICELK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

7.0e-06

28.57

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Query:  MNVTITFLHGELEEVIYMAQPKG-----------------YGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKD
        ++V   FL G L + +YM+QP G                 YG+K     WY+   T++L  GF  +  D  ++  L +  + I++L+YVDD+++   D
Subjt:  MNVTITFLHGELEEVIYMAQPKG-----------------YGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKD

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.8e-07

27.27

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Query:  MNVTITFLHGELEEVIYMAQPKG---------------------YGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVS
        ++++  FL+G+L+E IYM  P G                     YG+K     W+++F   ++  GF ++  D   + K++    ++ +L+YVDD+I+ S
Subjt:  MNVTITFLHGELEEVIYMAQPKG---------------------YGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVS

Query:  KDYAKICELK
         + A + ELK
Subjt:  KDYAKICELK

Sequences

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CDS sequence

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ATGAATGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATGGGGTGAAGGGAAAGGAAGACATGTGGTATATCAGGTT
TGATACTTTCATTCTAAAGCAAGGATTCCACAGAAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAAAGGTACGTACATCCATCTACTGTTATATGTAGATG
ATATGATACTAGTGTCTAAGGATTACGCTAAAATCTGTGAACTCAAGAAATAA

mRNA sequence

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Protein sequence

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MNVTITFLHGELEEVIYMAQPKGYGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK

IVF0006757 (gene) of Melon (IVF77) v1 genome