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IVF0006783 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006783
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein TIC 40, chloroplastic
Genome locationchr10:17120628..17130729
RNA-Seq ExpressionIVF0006783
SyntenyIVF0006783
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:0045037 - protein import into chloroplast stroma (biological process)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3458437.1 protein TIC 40, chloroplastic [Gossypium australe]1.89e-2979.1Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        M GS  WD+R+MDSLKNFD +SP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
KAE8673161.1 Detected protein of unknown function [Hibiscus syriacus]6.67e-2977.61Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        M GS  WD+R+MDSLKNFD +SP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQ  IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
KAF5201246.1 Tic 40 protein [Thalictrum thalictroides]7.06e-2977.61Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        M GS  WD+++M+SLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
XP_038877066.1 protein TIC 40, chloroplastic isoform X2 [Benincasa hispida]7.33e-2986.57Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP+IAMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
XP_042486801.1 protein TIC 40, chloroplastic-like [Macadamia integrifolia]3.50e-2979.1Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        M GS  WD+++MDSLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
TrEMBL top hitse value%identityAlignment
A0A2J6LB47 Uncharacterized protein4.0e-2373.68Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLY
        M GS  WD+R+MDSLKNFD SSP+VK+QFDQIGLTPEEVISKIM NP++AMAFQNPRVQA IMDV+  FN +  L+
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLY
A0A6J1FE53 protein TIC 40, chloroplastic-like isoform X21.2e-2283.58Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
A0A6J1FIY5 protein TIC 40, chloroplastic-like isoform X11.2e-2283.58Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
A0A6J1JYZ5 protein TIC 40, chloroplastic-like isoform X21.2e-2272.29Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIM
        MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA IMD  Q      T YQ+  ++M
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIM
A0A6J1K0V5 protein TIC 40, chloroplastic-like isoform X11.2e-2272.29Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIM
        MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA IMD  Q      T YQ+  ++M
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIM
SwissProt top hitse value%identityAlignment
Q8GT66 Protein TIC 40, chloroplastic5.5e-2273.13Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
        M G   WD R+MD+LKNFD +SP VKQQFDQIGL+P+EVISKIM NP +AMAFQNPRVQA IMD  Q
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQ
Q9FMD5 Protein TIC 40, chloroplastic6.1e-2161.9Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQR-FNFLQTLYQSFPKIM
        MSGS  WD R+ D+LKNFD +SP+VKQQF+QIGLTPEEVISKIM NP +AMAFQNPRVQA +M+  +   N ++  YQ+  ++M
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQR-FNFLQTLYQSFPKIM
Arabidopsis top hitse value%identityAlignment
AT5G16620.1 hydroxyproline-rich glycoprotein family protein4.3e-2261.9Show/hide
Query:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQR-FNFLQTLYQSFPKIM
        MSGS  WD R+ D+LKNFD +SP+VKQQF+QIGLTPEEVISKIM NP +AMAFQNPRVQA +M+  +   N ++  YQ+  ++M
Subjt:  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQR-FNFLQTLYQSFPKIM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAAGCCTACGATGGGACGATCGCCTCATGGACTCTTTAAAGAACTTTGATTTTAGTAGCCCTAAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGA
AGAAGTTATTTCCAAAATTATGGTCAATCCCAAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAACCATCATGGATGTAATTCAAAGATTCAATTTTTTACAAA
CATTGTATCAATCCTTTCCTAAAATCATGACAAATATAATGCAAATAATTATCATAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAAGCCTACGATGGGACGATCGCCTCATGGACTCTTTAAAGAACTTTGATTTTAGTAGCCCTAAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGA
AGAAGTTATTTCCAAAATTATGGTCAATCCCAAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAACCATCATGGATGTAATTCAAAGATTCAATTTTTTACAAA
CATTGTATCAATCCTTTCCTAAAATCATGACAAATATAATGCAAATAATTATCATAAATTAG
Protein sequenceShow/hide protein sequence
MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIMTNIMQIIIIN