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IVF0006831 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006831
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:2896722..2897363
RNA-Seq ExpressionIVF0006831
SyntenyIVF0006831
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]2.85e-11989.86Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY
        M  EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK EGEV AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL  IPMIPIQPPYPKWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVGDT
        AGGVG +
Subjt:  AGGVGDT

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]1.78e-12089.86Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY
        MA EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK EGEV AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL  IPMIPIQPPYPKWYDSNA+ DYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVGDT
        AGGVG +
Subjt:  AGGVGDT

KAA0042503.1 uncharacterized protein E6C27_scaffold246G00570 [Cucumis melo var. makuwa]1.97e-11987.62Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY
        MA EVQPPLTDKEMTSMF+NT RA FYDRMIGNASTNFSDIIVIGERIEYGI+HGRLAEATT+Y GIKKGTISKK EGEV AIGFPNS KHKSIF QRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPS ISNVSHI YNSYV A+  SETPK INSNSPRPFVQ QGSKTNSDTW+FDPIPMTY ELLPQLIQNRQL PIPMIPIQ PYPKWYDSNA+C+YH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AG
        AG
Subjt:  AG

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]3.53e-11988.41Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY
        M  EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAE TTEYGGIKKGTISKK EGE+ AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVS+I YNSYV A+T SETPK +NSNSPRPFVQGQGSK NSDTW+FDPIPMTYTELLPQLIQNRQL PIPMIPIQPPYPKWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVGDT
        AGGVG +
Subjt:  AGGVGDT

TYK23633.1 uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa]7.32e-12388.24Show/hide
Query:  EVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKYEQN
        EVQPPLTDKEMT +F+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK EGEV  IGFPNS KHKSIF QRKYEQN
Subjt:  EVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKK-EGEVRAIGFPNSRKHKSIFGQRKYEQN

Query:  FPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYHAGG
        FPSYISNVSHI YNSYV A+T SET K +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL PIPMIPIQPPYPKWYDSNA+CDYHAGG
Subjt:  FPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYHAGG

Query:  VGDT
        V  +
Subjt:  VGDT

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein4.4e-10290.73Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY
        M  EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS KKEGEV AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL  IPMIPIQPPYPKWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVG
        AGGVG
Subjt:  AGGVG

A0A5A7T0R1 Uncharacterized protein2.2e-10190.73Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY
        MA EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS KKEGEV AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL  IPMIPIQPPYPKWYDSNA+ DYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVG
        AGGVG
Subjt:  AGGVG

A0A5A7T1W2 Retrotrans_gag domain-containing protein2.2e-10190.24Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY
        MA EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS KKEGEV AIGFPNS KHKSIFG RKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYI+NVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTELLPQLIQNRQL  IPMIPIQPPYPKWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVG
        AGGVG
Subjt:  AGGVG

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.9e-10089.76Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY
        MA EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYG IKKGTIS KKEGEV AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVSHI YNSYV A+T SETPK +NSNSPRPFVQGQGSKTNSDTW+FDPIPMTYTE+LPQLIQNRQL  IPMIPIQPPY KWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVG
        AGGVG
Subjt:  AGGVG

A0A5A7V3W7 Retrotrans_gag domain-containing protein6.4e-10189.27Show/hide
Query:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY
        M  EVQPPLTDKEMTSMF+NT RA FY+RMIGNASTNFSDIIVIGERIEYGIKHGRLAE TTEYGGIKKGTIS KKEGE+ AIGFPNS KHKSIFGQRKY
Subjt:  MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTIS-KKEGEVRAIGFPNSRKHKSIFGQRKY

Query:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH
        EQNFPSYISNVS+I YNSYV A+T SETPK +NSNSPRPFVQGQGSK NSDTW+FDPIPMTYTELLPQLIQNRQL PIPMIPIQPPYPKWYDSNA+CDYH
Subjt:  EQNFPSYISNVSHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYH

Query:  AGGVG
        AGGVG
Subjt:  AGGVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCGAGGTTCAGCCACCGTTAACGGACAAAGAAATGACATCTATGTTTATAAATACCTTCCGGGCTCTATTCTATGATCGAATGATTGGTAATGCATCAACAAA
TTTTTCTGACATTATTGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACGGGAGGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTA
AGAAAGAAGGAGAGGTTCGTGCAATTGGTTTTCCTAATTCAAGGAAGCACAAATCTATTTTTGGTCAGAGAAAATATGAGCAAAACTTTCCGTCGTATATAAGCAATGTT
TCTCATATCCTTTATAATAGCTATGTATCAGCCTATACATTCTCTGAAACTCCAAAACTCATTAACTCAAATTCTCCTCGACCATTTGTACAGGGTCAAGGTAGCAAAAC
CAATTCAGATACATGGAAGTTTGATCCAATTCCCATGACTTATACAGAGCTTTTACCTCAGCTAATTCAAAATCGACAGTTAACTCCTATTCCAATGATTCCTATACAAC
CTCCTTACCCAAAATGGTATGATTCAAATGCTCAATGTGATTATCATGCTGGAGGAGTGGGAGACACTCAACTGAAAATTGTTTGGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCGAGGTTCAGCCACCGTTAACGGACAAAGAAATGACATCTATGTTTATAAATACCTTCCGGGCTCTATTCTATGATCGAATGATTGGTAATGCATCAACAAA
TTTTTCTGACATTATTGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACGGGAGGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTA
AGAAAGAAGGAGAGGTTCGTGCAATTGGTTTTCCTAATTCAAGGAAGCACAAATCTATTTTTGGTCAGAGAAAATATGAGCAAAACTTTCCGTCGTATATAAGCAATGTT
TCTCATATCCTTTATAATAGCTATGTATCAGCCTATACATTCTCTGAAACTCCAAAACTCATTAACTCAAATTCTCCTCGACCATTTGTACAGGGTCAAGGTAGCAAAAC
CAATTCAGATACATGGAAGTTTGATCCAATTCCCATGACTTATACAGAGCTTTTACCTCAGCTAATTCAAAATCGACAGTTAACTCCTATTCCAATGATTCCTATACAAC
CTCCTTACCCAAAATGGTATGATTCAAATGCTCAATGTGATTATCATGCTGGAGGAGTGGGAGACACTCAACTGAAAATTGTTTGGCTTTAA
Protein sequenceShow/hide protein sequence
MATEVQPPLTDKEMTSMFINTFRALFYDRMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKEGEVRAIGFPNSRKHKSIFGQRKYEQNFPSYISNV
SHILYNSYVSAYTFSETPKLINSNSPRPFVQGQGSKTNSDTWKFDPIPMTYTELLPQLIQNRQLTPIPMIPIQPPYPKWYDSNAQCDYHAGGVGDTQLKIVWL