CuGenDBv2

Gene ID	IVF0006849
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr12:11139008..11139166
RNA-Seq Expression	IVF0006849
Synteny	IVF0006849
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW26649.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

4.73e-20

80.77

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

RVW49214.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.57e-20

80.77

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

RVW56504.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

6.75e-20

80.77

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

RVW72526.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

2.95e-20

80.77

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

WP_205680949.1 hypothetical protein, partial [Acinetobacter baumannii]

3.00e-20

82.69

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YL GTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

TrEMBL top hits

e value

%identity

Alignment

A0A2N9E4Z2 Reverse transcriptase Ty1/copia-type domain-containing protein

3.8e-15

84.62

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YLLGTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

A0A2N9FRL0 CCHC-type domain-containing protein

3.8e-15

84.62

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YLLGTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

A0A2N9G065 Reverse transcriptase Ty1/copia-type domain-containing protein

3.8e-15

84.62

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YLLGTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

A0A2N9GP24 CCHC-type domain-containing protein

3.8e-15

84.62

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YLLGTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

A0A2N9HLC7 CCHC-type domain-containing protein

3.8e-15

84.62

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        MIGSLLYLTA RPDIMFSVC CARFQS PKES L AVKRI +YLLGTID+GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

SwissProt top hits

e value

%identity

Alignment

P92519 Uncharacterized mitochondrial protein AtMg00810

8.4e-04

40.38

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        ++G+L YLT  RPDI ++V    +    P  +D   +KR+L+Y+ GTI  GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

9.0e-06

46.15

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        ++GSL YL   RPDI ++V   ++F   P E  L A+KRIL+YL GT + G+
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.0e-04

38.46

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        ++GSL YL   RPD+ ++V   +++   P +   +A+KR+L+YL GT D G+
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00240.1 Gag-Pol-related retrotransposon family protein

3.0e-04

38.3

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Query:  LYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        +YLT  RPD+ F+V   ++F S  + + + AV ++L Y+ GT+  GL
Subjt:  LYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

ATMG00810.1 DNA/RNA polymerases superfamily protein

6.0e-05

40.38

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Query:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL
        ++G+L YLT  RPDI ++V    +    P  +D   +KR+L+Y+ GTI  GL
Subjt:  MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

Sequences

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CDS sequence

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ATGATTGGATCCTTACTTTATTTGACCGCTAGGAGACCCGATATCATGTTTAGTGTATGTTTTTGTGCTAGATTTCAATCTTTTCCCAAAGAATCAGATTTGCATGCCGT
TAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGA

mRNA sequence

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ATGATTGGATCCTTACTTTATTTGACCGCTAGGAGACCCGATATCATGTTTAGTGTATGTTTTTGTGCTAGATTTCAATCTTTTCCCAAAGAATCAGATTTGCATGCCGT
TAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGA

Protein sequence

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MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL

IVF0006849 (gene) of Melon (IVF77) v1 genome