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IVF0006865 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006865
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor PRE5-like
Genome locationchr12:25422486..25422906
RNA-Seq ExpressionIVF0006865
SyntenyIVF0006865
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.04e-3377.5Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLL

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]6.88e-46100Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
        MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]7.92e-52100Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]1.74e-4690.36Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVKDLL FT
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]2.97e-3574.12Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTG--EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKL D++L+NLV KL+TLLP LN KPDN S  S    +ILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVD EMVKDL++ +
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTG--EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein2.2e-3390.36Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVKDLL FT
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

A0A1S3B0J1 transcription factor PRE5-like1.9e-37100Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

A0A5A7SZP9 Transcription factor PRE5-like1.9e-37100Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
        MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

A0A5B6V213 Transcription factor ILI3-like5.7e-1356.1Show/hide
Query:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGV---DFEMVKDLL
        AS+K+ D+EL  L+ +L TLLPQLNH     + +ST +ILKETC YI++LQKEVDDLSERL + LDSM +   D E + +LL
Subjt:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGV---DFEMVKDLL

A0A5D3BKI2 Transcription factor PRE5-like3.8e-33100Show/hide
Query:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
        MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
A2X9L8 Transcription factor ILI52.8e-0954.39Show/hide
Query:  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL
        + + E+  L+SKL++LLP  N +   SS+AST ++LKETC+YIK L +EVDDLS+RL
Subjt:  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL

Q6YUX0 Transcription factor ILI52.8e-0954.39Show/hide
Query:  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL
        + + E+  L+SKL++LLP  N +   SS+AST ++LKETC+YIK L +EVDDLS+RL
Subjt:  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL

Q8GW32 Transcription factor PRE66.2e-0939.51Show/hide
Query:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ D+++ +LVSKL+ L+P+L  +   S + S  ++L+ETC+YI+ L +EVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKDLL

Q9FLE9 Transcription factor PRE19.6e-1043.66Show/hide
Query:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD
        ++ ++ DN++ +LVSKLR +LP++  +   S +AS  ++L+ETC+YI+ L +EVD+LSERL + L+S+  D
Subjt:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD

Q9LJX1 Transcription factor PRE52.5e-1045.71Show/hide
Query:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD
        +S++ D+++ +LVSKLR  LP++ H+   S + S  ++L+ETC+YI+KL +EVD+LS+RL + LDS+  D
Subjt:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.4e-1039.51Show/hide
Query:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ D+++ +LVSKL+ L+P+L  +   S + S  ++L+ETC+YI+ L +EVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKDLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.8e-1145.71Show/hide
Query:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD
        +S++ D+++ +LVSKLR  LP++ H+   S + S  ++L+ETC+YI+KL +EVD+LS+RL + LDS+  D
Subjt:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 31.4e-0845.45Show/hide
Query:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDS
        +S + D ++ +LV +L  LLP+L +    S + S   +L+ETC YI+ L KEVDDLSERL + L+S
Subjt:  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDS

AT5G15160.1 BANQUO 29.9e-1041.18Show/hide
Query:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSM
        +SS++ D+++ +L+SKLR  +P++      S+  S  ++L+ETC+YI+ L KE DDLS+RL + L+S+
Subjt:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.8e-1143.66Show/hide
Query:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD
        ++ ++ DN++ +LVSKLR +LP++  +   S +AS  ++L+ETC+YI+ L +EVD+LSERL + L+S+  D
Subjt:  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTAGGTGATAATGAGCTTAAAAATCTTGTCTCCAAATTGCGAACTTTGCTCCCTCAACTCAACCATAAGCCCGACAACTCCTCCGAGGCATCGAC
GGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTG
AAATGGTTAAAGATCTTCTAATTTTTACTTAA
mRNA sequenceShow/hide mRNA sequence
CACAAACAACATTCCTTTTTTGTTCTCTCCAAATTTGCTTCTTTTTTTCTTTTCATCCATGGCTTCCTCCAAATTAGGTGATAATGAGCTTAAAAATCTTGTCTCCAAAT
TGCGAACTTTGCTCCCTCAACTCAACCATAAGCCCGACAACTCCTCCGAGGCATCGACGGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAA
GTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTAATTTTTACTTAA
Protein sequenceShow/hide protein sequence
MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT