CuGenDBv2

Gene ID	IVF0006918
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr05:6988341..6988829
RNA-Seq Expression	IVF0006918
Synteny	IVF0006918
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR041588 - Integrase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032022.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]

5.34e-119

100

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

KAA0033220.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

1.26e-102

88.27

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLER+PD KPWYHDIKHYIAYREYP   SENSK T+RRLAMKFFL+GEVLYKRNYDMTLL+CVDAL+A+K LEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANGHMMARQ+LRA YFWLTMESDCIKYVRRCHKCQIYA K HA  SPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

KAA0046609.1 hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]

1.04e-96

90.12

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPD K WYHDIKHYIAYREYP  ASENSK TIRRLAMKFFL+GEVLYKRNYDMTLL+CVDALEA+  LEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANGHMMARQ+LRA YFWLTMESDCIKYVRRCHKCQIYA KVHA  SPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

TYK10941.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

5.39e-97

86.42

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAY+EEVQPIRMEKYKTPSYCMSLEREPD KPWYHDIKHYIAYREYP  ASENSK TI+RLAMKFFL+G+VLYKRNYDMTLL+CVDALE+EKILEE 
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANG+MMARQVLR+ YFWLTME DCIK+ RRCHKCQIYA KVHA  S LHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

XP_016903163.1 PREDICTED: uncharacterized protein LOC107990337 [Cucumis melo]

1.92e-99

86.42

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPD KPWYHDIKHYIAYREYP  AS+NSK TI+RLAMKFFL+G+VLYKRNYDMTLL+CVDALEAE ILEE 
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANG+MMARQVLR+ YFWLTME DCIK+ RRCHKCQIYA KVHA  S LHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLW0 RNA-directed DNA polymerase

7.7e-91

100

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

A0A5A7SQN1 Ribonuclease H

6.2e-80

88.27

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLER+PD KPWYHDIKHYIAYREYP   SENSK T+RRLAMKFFL+GEVLYKRNYDMTLL+CVDAL+A+K LEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANGHMMARQ+LRA YFWLTMESDCIKYVRRCHKCQIYA K HA  SPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

A0A5A7T2W3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

6.4e-77

86.42

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPD KPWYHDIKHYIAYREYP  AS+NSK TI+RLAMKFFL+G+VLYKRNYDMTLL+CVDALEAE ILEE 
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANG+MMARQVLR+ YFWLTME DCIK+ RRCHKCQIYA KVHA  S LHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

A0A5A7TZF3 Ribonuclease H

3.6e-80

90.12

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPD K WYHDIKHYIAYREYP  ASENSK TIRRLAMKFFL+GEVLYKRNYDMTLL+CVDALEA+  LEEI
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANGHMMARQ+LRA YFWLTMESDCIKYVRRCHKCQIYA KVHA  SPLHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

A0A5D3CGL1 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

2.9e-77

86.42

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Query:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI
        MFNVAY+EEVQPIRMEKYKTPSYCMSLEREPD KPWYHDIKHYIAYREYP  ASENSK TI+RLAMKFFL+G+VLYKRNYDMTLL+CVDALE+EKILEE 
Subjt:  MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEI

Query:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP
        HEGVCG HANG+MMARQVLR+ YFWLTME DCIK+ RRCHKCQIYA KVHA  S LHVLTAP
Subjt:  HEGVCGAHANGHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAAGACACCATCCTATTGTATGAGCCTCGAGCGAGAACCAGACAGTAAACCTTGGTA
TCATGATATTAAGCACTACATCGCATATCGGGAGTATCCACTAGAGGCATCGGAAAATAGTAAGCACACCATTAGGAGGTTAGCCATGAAGTTCTTTCTAAATGGTGAAG
TATTATACAAAAGAAATTACGATATGACTCTACTGCAATGTGTCGACGCTTTGGAAGCTGAAAAGATTTTGGAAGAAATTCATGAAGGAGTGTGTGGGGCGCATGCAAAT
GGACACATGATGGCGAGGCAAGTTTTACGTGCTGATTATTTTTGGTTGACCATGGAATCAGACTGCATCAAATATGTGAGAAGATGCCATAAATGTCAAATATACGCATA
TAAAGTGCATGCTCTAGTCTCTCCATTGCATGTGTTGACGGCTCCATGA

mRNA sequence

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Protein sequence

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MFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDSKPWYHDIKHYIAYREYPLEASENSKHTIRRLAMKFFLNGEVLYKRNYDMTLLQCVDALEAEKILEEIHEGVCGAHAN
GHMMARQVLRADYFWLTMESDCIKYVRRCHKCQIYAYKVHALVSPLHVLTAP

IVF0006918 (gene) of Melon (IVF77) v1 genome