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IVF0006956 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006956
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy sub-class
Genome locationchr09:13684453..13684860
RNA-Seq ExpressionIVF0006956
SyntenyIVF0006956
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]1.11e-0943.12Show/hide
Query:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA
        F S G  VSS    +     +T  P T   Y+   I P + S           Q+SY ED S +SW+  S +  KY S +EL GGRTKVQP  IEKM NA
Subjt:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA

Query:  FPTSGERSS
           SGERSS
Subjt:  FPTSGERSS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.93e-2564.37Show/hide
Query:  FSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTK
        F+EGNG+SS TS V PKKIQTR+P T+  YL  K  PSTV LF IGHK FEL DSYFE+ + +SWH  S+I+ KYRS SEL GGR K
Subjt:  FSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.25e-1435.93Show/hide
Query:  SEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYI--------------------------------------------------------
        SEGNG+S RTSSV  +K++TR+  TQ  +  VK +P+TVSLF++                                                        
Subjt:  SEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYI--------------------------------------------------------

Query:  -GHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANAFPTSGERSSGVR
             FELQDS  +D S +S HR S +F KYRS  EL+  RTKVQ   IEKMANA   SG  S G R
Subjt:  -GHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANAFPTSGERSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]8.81e-1743.65Show/hide
Query:  RTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSY---------------------------FEDISPNSWHRHSNIFEKYRSESELL
        R ++ RP+         Q FY  VK  P+ V LF +GHK FEL+DSY                            E  S   WHR S +F KYRS SE++
Subjt:  RTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSY---------------------------FEDISPNSWHRHSNIFEKYRSESELL

Query:  GGRTKVQPVMIEKMANAFPTSGERSS
         GRTKVQP  IE MANA PTSGERSS
Subjt:  GGRTKVQPVMIEKMANAFPTSGERSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.09e-1243.12Show/hide
Query:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA
        +FS+GNG+SSRTSSV  KK                                        D S + WH  S IF +YRS SEL+G RTKVQ   IEK+ANA
Subjt:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA

Query:  FPTSGERSS
         PTSGERSS
Subjt:  FPTSGERSS

TrEMBL top hitse value%identityAlignment
A0A5A7U1Q6 Retrotransposon protein, putative, Ty3-gypsy sub-class2.0e-0740.37Show/hide
Query:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA
        F S G  VSS    +     +T  P T  +   +           + H +   Q+SY ED S +SW+  S +  KY S +EL GGRTKVQP  IEKM NA
Subjt:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA

Query:  FPTSGERSS
           SGERSS
Subjt:  FPTSGERSS

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed4.9e-1443.65Show/hide
Query:  RTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSY---------------------------FEDISPNSWHRHSNIFEKYRSESELL
        R ++ RP+         Q FY  VK  P+ V LF +GHK FEL+DSY                            E  S   WHR S +F KYRS SE++
Subjt:  RTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSY---------------------------FEDISPNSWHRHSNIFEKYRSESELL

Query:  GGRTKVQPVMIEKMANAFPTSGERSS
         GRTKVQP  IE MANA PTSGERSS
Subjt:  GGRTKVQPVMIEKMANAFPTSGERSS

A0A5A7VGQ5 Uncharacterized protein1.3e-1135.93Show/hide
Query:  SEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYI--------------------------------------------------------
        SEGNG+S RTSSV  +K++TR+  TQ  +  VK +P+TVSLF++                                                        
Subjt:  SEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYI--------------------------------------------------------

Query:  -GHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANAFPTSGERSSGVR
             FELQDS  +D S +S HR S +F KYRS  EL+  RTKVQ   IEKMANA   SG  S G R
Subjt:  -GHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANAFPTSGERSSGVR

A0A5D3BG85 Uncharacterized protein1.6e-0943.12Show/hide
Query:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA
        +FS+GNG+SSRTSSV  KK                                        D S + WH  S IF +YRS SEL+G RTKVQ   IEK+ANA
Subjt:  FFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKVQPVMIEKMANA

Query:  FPTSGERSS
         PTSGERSS
Subjt:  FPTSGERSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein3.0e-1964.37Show/hide
Query:  FSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTK
        F+EGNG+SS TS V PKKIQTR+P T+  YL  K  PSTV LF IGHK FEL DSYFE+ + +SWH  S+I+ KYRS SE LGGR K
Subjt:  FSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGCTCTTCCAATTAATGGTGAACACTCGTCCAGAGTTAGAAACCATAAAACTTCTTTTTTCAGCGAAGGAAACGGAGTAAGCTCAAGAACTTCTAGTGTTCG
TCCCAAGAAAATTCAAACGAGAATACCTTGGACTCAGTGTTTCTACCTCGGGGTAAAAATCGAGCCTTCAACGGTTTCTTTGTTTTATATTGGTCATAAGTATTTCGAGC
TTCAGGATTCATACTTCGAGGACATCAGTCCAAATTCCTGGCATCGTCACTCAAACATTTTTGAAAAGTATAGGTCAGAAAGCGAGCTCCTTGGAGGGAGAACTAAAGTG
CAACCTGTAATGATCGAAAAGATGGCCAATGCTTTTCCAACGAGTGGCGAACGATCGTCTGGTGTTAGAAACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGCTCTTCCAATTAATGGTGAACACTCGTCCAGAGTTAGAAACCATAAAACTTCTTTTTTCAGCGAAGGAAACGGAGTAAGCTCAAGAACTTCTAGTGTTCG
TCCCAAGAAAATTCAAACGAGAATACCTTGGACTCAGTGTTTCTACCTCGGGGTAAAAATCGAGCCTTCAACGGTTTCTTTGTTTTATATTGGTCATAAGTATTTCGAGC
TTCAGGATTCATACTTCGAGGACATCAGTCCAAATTCCTGGCATCGTCACTCAAACATTTTTGAAAAGTATAGGTCAGAAAGCGAGCTCCTTGGAGGGAGAACTAAAGTG
CAACCTGTAATGATCGAAAAGATGGCCAATGCTTTTCCAACGAGTGGCGAACGATCGTCTGGTGTTAGAAACAATTGA
Protein sequenceShow/hide protein sequence
MDNALPINGEHSSRVRNHKTSFFSEGNGVSSRTSSVRPKKIQTRIPWTQCFYLGVKIEPSTVSLFYIGHKYFELQDSYFEDISPNSWHRHSNIFEKYRSESELLGGRTKV
QPVMIEKMANAFPTSGERSSGVRNN