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IVF0006992 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006992
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr08:24042921..24043318
RNA-Seq ExpressionIVF0006992
SyntenyIVF0006992
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.50e-2753.73Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      +K NP 
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK
        YLQW+  DQALITLINATLS S L HVV S + K
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.65e-2754.41Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +P  S P   S     V TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      ++ NPE
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL
        YLQW+  DQALITLIN TLS S LAHVV S  SK+L
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.18e-2754.41Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +   S P   S     V TS LFLL NICNLVP+ LDSTN+ILWKYQVSSILKAHS F                      ++ NPE
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL
        YLQW+   QALITLINATLS S LAHVVGS  SK+L
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL

KGN50818.1 hypothetical protein Csa_018838 [Cucumis sativus]2.87e-3359.23Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MATS SQ D I+T+ P N IPT  SPQ Q V TS LFLL NICN VPL LDSTN++L KYQVSSILKAH +F                     T KT+  
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGS
        +L W+  DQALITLINATLSPS LAHVVGS
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGS

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]2.33e-2853.73Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      +K NP 
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK
        YLQW+  DQALITLINATLS S L HVV S + K
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK

TrEMBL top hitse value%identityAlignment
A0A0A0KMJ5 Uncharacterized protein8.1e-2659.23Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MATS SQ D I+T+ P N IPT  SPQ Q V TS LFLL NICN VPL LDSTN++L KYQVSSILKAH +F                     T KT+  
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGS
        +L W+  DQALITLINATLSPS LAHVVGS
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGS

A0A5A7UZE5 Putative mitochondrial protein5.8e-2454.41Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +P  S P   S     V TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      ++ NPE
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL
        YLQW+  DQALITLIN TLS S LAHVV S  SK+L
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL

A0A5A7VGG0 Retrotransposon protein9.9e-2454.41Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +   S P   S     V TS LFLL NICNLVP+ LDSTN+ILWKYQVSSILKAHS F                      ++ NPE
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL
        YLQW+   QALITLINATLS S LAHVVGS  SK+L
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL

A0A5D3BEU0 Putative mitochondrial protein1.7e-2353.68Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT   Q+D     +   S P   S     V TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      ++ NPE
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL
        YLQW+  DQALITLINATLS S L HVVGS  SK+L
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSKSL

A0A5D3CCL2 Retrotransposon protein1.7e-2353.73Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF                      +K NP 
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLF---------------------TAKTNPE

Query:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK
        YLQW+  DQALITLINATLS S L HVV S + K
Subjt:  YLQWILHDQALITLINATLSPSTLAHVVGSTFSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTCCAAATCCCAAAATGATCAAATCACCACTGAAATTCCTACCAATTCCATTCCCACAAAGCCATCACCACAAAAGCAAATTGTTACTACTTCCATTCTCTT
CTTGCTCTGCAATATTTGCAACCTCGTACCCCTTTGTCTAGACTCCACGAACTTTATTCTATGGAAGTACCAAGTTTCTTCCATTCTCAAAGCCCATTCCCTTTTCACTG
CTAAAACCAATCCAGAATATCTTCAATGGATCTTACATGACCAAGCCCTCATCACCCTCATAAACGCAACCTTATCACCCTCTACCCTTGCTCATGTCGTTGGCTCAACC
TTTTCAAAATCATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCTCCAAATCCCAAAATGATCAAATCACCACTGAAATTCCTACCAATTCCATTCCCACAAAGCCATCACCACAAAAGCAAATTGTTACTACTTCCATTCTCTT
CTTGCTCTGCAATATTTGCAACCTCGTACCCCTTTGTCTAGACTCCACGAACTTTATTCTATGGAAGTACCAAGTTTCTTCCATTCTCAAAGCCCATTCCCTTTTCACTG
CTAAAACCAATCCAGAATATCTTCAATGGATCTTACATGACCAAGCCCTCATCACCCTCATAAACGCAACCTTATCACCCTCTACCCTTGCTCATGTCGTTGGCTCAACC
TTTTCAAAATCATTGTGA
Protein sequenceShow/hide protein sequence
MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFTAKTNPEYLQWILHDQALITLINATLSPSTLAHVVGST
FSKSL