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IVF0007030 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007030
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr10:6109637..6110262
RNA-Seq ExpressionIVF0007030
SyntenyIVF0007030
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050311.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.29e-121100Show/hide
Query:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
        RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
Subjt:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI

Query:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
Subjt:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]9.25e-10588.7Show/hide
Query:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
        R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+
Subjt:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI

Query:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
         QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMH H RGRGEHNEYLYY+V AAVP+QSDEQQQQENAVVPE
Subjt:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.15e-10388.07Show/hide
Query:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
        R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+
Subjt:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI

Query:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP
         QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYY+V AAVPEQS+E QQQENA VP
Subjt:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]1.61e-10787.85Show/hide
Query:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY
        MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYY
Subjt:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY

Query:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DSG+ QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VPE
Subjt:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

XP_016900498.1 PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo]8.12e-10887.85Show/hide
Query:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY
        MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYY
Subjt:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY

Query:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DSG+ QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VPE
Subjt:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

TrEMBL top hitse value%identityAlignment
A0A1S3BLK4 mediator of RNA polymerase II transcription subunit 12-like isoform X13.9e-8387.85Show/hide
Query:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY
        MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYY
Subjt:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY

Query:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DSG+ QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VPE
Subjt:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

A0A1S4DWZ9 GATA zinc finger domain-containing protein 10-like isoform X23.9e-8387.85Show/hide
Query:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY
        MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYY
Subjt:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY

Query:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DSG+ QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VPE
Subjt:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X19.6e-8288.7Show/hide
Query:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
        R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+
Subjt:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI

Query:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
         QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMH H RGRGEHNEYLYY+V AAVP+QSDEQQQQENAVVPE
Subjt:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

A0A5A7U9V2 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.8e-94100Show/hide
Query:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
        RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI
Subjt:  RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGI

Query:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
Subjt:  DQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.9e-8387.85Show/hide
Query:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY
        MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYY
Subjt:  MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYY

Query:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
        DSG+ QSSDFGRGYYN EAG SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VPE
Subjt:  DSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCATCTGAGATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCCACAGCAGGTTCTAAATATATGCAACGATAACGAACAGTACATAGAGAACATCCACTA
TATGTACGATGTCCCTATTGTACCTGCTCTAGTTCAAAGGAGACGTCCTCTAGTCCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCG
TGACACAAACACAGACACAAAGAGAGCATAGTTACGTTAGTCCAGTAATGATGATGCCAACGTTTGGAACGACATATTATGATTCAGGAATCGATCAATCGTCAGACTTT
GGAAGAGGATATTACAATTTAGAGGCAGGTCCATCTTCAACGGACTTTAGGCAACAATACTTTGATTTAGAGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGCG
TGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGTGGTACCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCATCTGAGATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCCACAGCAGGTTCTAAATATATGCAACGATAACGAACAGTACATAGAGAACATCCACTA
TATGTACGATGTCCCTATTGTACCTGCTCTAGTTCAAAGGAGACGTCCTCTAGTCCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCG
TGACACAAACACAGACACAAAGAGAGCATAGTTACGTTAGTCCAGTAATGATGATGCCAACGTTTGGAACGACATATTATGATTCAGGAATCGATCAATCGTCAGACTTT
GGAAGAGGATATTACAATTTAGAGGCAGGTCCATCTTCAACGGACTTTAGGCAACAATACTTTGATTTAGAGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGCG
TGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGTGGTACCCGAGTAA
Protein sequenceShow/hide protein sequence
MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDF
GRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE