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IVF0007046 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007046
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:14902098..14906418
RNA-Seq ExpressionIVF0007046
SyntenyIVF0007046
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044610.1 retrotransposon protein [Cucumis melo var. makuwa]3.65e-5880.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S AS+GR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHLFSRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]5.37e-5979.51Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S AS+GR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

KAA0060307.1 retrotransposon protein [Cucumis melo var. makuwa]2.16e-6498.11Show/hide
Query:  AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI
        AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIA+WSARALVNDNHVRQEFFRILREMSELTSLD ALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI
Subjt:  AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI

Query:  LRDIFT
        LRDIFT
Subjt:  LRDIFT

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]1.27e-5880.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S ASEGR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]2.43e-5880.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S ASEGR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

TrEMBL top hitse value%identityAlignment
A0A5A7SRU1 Retrotransposon protein6.4e-4580.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S ASEGR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

A0A5A7TN44 Retrotransposon protein2.9e-4580.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S AS+GR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHLFSRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

A0A5D3CHA0 Retrotransposon protein6.4e-4580.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S ASEGR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

A0A5D3DCZ1 Retrotransposon protein6.4e-4580.33Show/hide
Query:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM
        +SQ+DVRASR S ASEGR GSSGSKRKRGSQR+ ELE I++AL+ TN+QLR IA W AR L NDNHVR EFFRILREM ELTSLDRALLQRHL SRMDD+
Subjt:  MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDM

Query:  RGFVLMPEDERDGFCRVILRDI
        RGFVLMPEDER+GFCRV+LRDI
Subjt:  RGFVLMPEDERDGFCRVILRDI

A0A5D3DEN3 Retrotransposon protein1.5e-4998.11Show/hide
Query:  AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI
        AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIA+WSARALVNDNHVRQEFFRILREMSELTSLD ALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI
Subjt:  AGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDMRGFVLMPEDERDGFCRVI

Query:  LRDIFT
        LRDIFT
Subjt:  LRDIFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAAGAGGATGTACGTGCATCACGAATTTCTCATGCGTCTGAGGGTAGGGCCGGATCTAGCGGATCGAAGAGGAAAAGGGGAAGCCAGCGAGAGGAGGAGCTTGA
AGTCATAAATATGGCGTTGGAGTGTACGAACGACCAACTCAGGATGATTGCGAATTGGTCTGCACGCGCCCTTGTCAATGACAACCATGTGCGCCAGGAATTCTTTCGCA
TATTGCGTGAGATGTCGGAACTAACAAGTTTGGATAGGGCGTTGTTGCAAAGGCACCTTTTTTCTCGTATGGATGACATGCGAGGTTTCGTACTGATGCCTGAGGATGAG
AGGGATGGCTTCTGTAGAGTCATCCTACGAGACATCTTCACATAG
mRNA sequenceShow/hide mRNA sequence
ATTTACCACTTCCATTTGTCATTGCTTGCCTTGTTTCTTTGTTTTCCAAATCTATCTTTCGTAGTATGGAAACATCGTCGAGTGCGCCGAAGCATGTATGAACGAAGGAG
GAGAAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAGGGTGGAAATCAGACAATGGTACATTCTGACCAGGTTACCTTACATAATTGGTACGCCTGATG
GCCGAGAAATCACCAGGATGTCGGGTTCGCGTAACCACTGTAATTGACTGCAGAATAAAGACACTGAAACAGACATTCTAGGCCATCACAGAAATACAGGGGTCATCATG
CAGTGAATTCGGCTGGAACGACGACGAAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGGTAAGAAACATAAACTAAACGTCCCGCTACTTGCCCA
ATCTACATTTACTTCACAAATTTTGTATGATTACTTTTAAGTGGTCCTCTTTTTTATGCAGTCGCATCCTACAGCGAAGGGGATCCTTAACAAACCGTTTCTCTATTACG
ACGAACTTGCATATGTGTTTGGCCGCGATAGGACGACGAATCGCTTCGTTGAGACGTTCGCGGACATAAGGTCTAACGAGCCTGCCAGGTATGAGGGGTTCGACATGCCT
GATGGGAATGAGGAGTTCCCATCAACGTACAACTAGGGGATTGACATGTCCCAAGAGGATGTACGTGCATCACGAATTTCTCATGCGTCTGAGGGTAGGGCCGGATCTAG
CGGATCGAAGAGGAAAAGGGGAAGCCAGCGAGAGGAGGAGCTTGAAGTCATAAATATGGCGTTGGAGTGTACGAACGACCAACTCAGGATGATTGCGAATTGGTCTGCAC
GCGCCCTTGTCAATGACAACCATGTGCGCCAGGAATTCTTTCGCATATTGCGTGAGATGTCGGAACTAACAAGTTTGGATAGGGCGTTGTTGCAAAGGCACCTTTTTTCT
CGTATGGATGACATGCGAGGTTTCGTACTGATGCCTGAGGATGAGAGGGATGGCTTCTGTAGAGTCATCCTACGAGACATCTTCACATAGTTTATGTTTCTACTTCGTTG
GCTTGCTTTTTTTTCCTTACTTGGCTCCCACTGTGTTATTGACTGTTATTTATTTTTCCT
Protein sequenceShow/hide protein sequence
MSQEDVRASRISHASEGRAGSSGSKRKRGSQREEELEVINMALECTNDQLRMIANWSARALVNDNHVRQEFFRILREMSELTSLDRALLQRHLFSRMDDMRGFVLMPEDE
RDGFCRVILRDIFT