; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0007100 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007100
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:17165097..17166329
RNA-Seq ExpressionIVF0007100
SyntenyIVF0007100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.16e-10876.82Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENYAMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]9.62e-11581.55Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENYAMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE NFLP+DL  T TFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

KAA0050447.1 polyprotein [Cucumis melo var. makuwa]7.90e-11581.12Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQR PNQRQSPQSNQNNSPQRP QT+ASSS T PSRGKPS QSSA SPMSAENYAMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVAP------------------RPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK VA                   + +  +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVAP------------------RPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.41e-10676.39Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQRP NQRQ  Q++QN++PQRPPQ++A+SSGT PSR K   QSSAPSPMSAENYAMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPT PNK  A           PR        + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.23e-10776.39Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENYAMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf21.4e-8776.82Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENYAMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

A0A5A7U3G5 Polyprotein1.9e-9281.55Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENYAMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE NFLP+DL  T TFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

A0A5A7U7T9 Polyprotein1.6e-9181.12Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQR PNQRQSPQSNQNNSPQR PQT+ASSS T PSRGKPS QSSA SPMSAENYAMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA------------------PRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK VA                   + +  +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA------------------PRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

A0A5D3D2Q6 Retrotransposable element Tf23.4e-8676.39Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP GRQRP NQRQ  Q++QN++PQRPPQ++A+SSGT PSR K   QSSAPSPMSAENYAMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPT PNK  A           PR        + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

A0A5D3DX32 Retrotransposable element Tf25.3e-8776.39Show/hide
Query:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH
        MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENYAMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL 
Subjt:  MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLH

Query:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD
        PSGPTTPNK  A           PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  NFLP+DL+ TRTFYEYILVD
Subjt:  PSGPTTPNKHVA-----------PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVD

Query:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
        S SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGG
AACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTC
AAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCAT
GTCGCTCCCCGACCGCTTCTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGG
ACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAA
ACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG
mRNA sequenceShow/hide mRNA sequence
GACAGACTGAAAAAGAACCCGAAGCCATGGACGGATGAGCATACTCGAGCAGTCCAATCAATCAAATCTTTGGCCAAAAGCGTCACATGCTTATCTCTTGTAGATGAACA
GGCCAAACTCATTATTGATATAGATGCATCCGATATTGGTTACGGAGGCATTCTCATACAAGAGCTTGACGGAAAAATCTCCATTGTCCGTTATCATTCGGGAATATGGA
ATAGTGCACAAAAAAACTATTCCACAGTCAAAAAGGAAGTTTTAGCAATAGTACTCTCCGTTCAAAAATTTCAAGGAGATCTCATCAACAAAGATTTCCTTGTTCGTACT
GATTCAAAAGCAAGCAAATTCATCTTTGAAAAAGATGTCAAGAATCTTATCTCAAAGCAAATCTTTGCAAGATGGCAAGCAATCTTATCTTGCTTTGATTTCAAAATTGA
GCCTATAAAAGACAGTGAGAATTCACTTGCTGATTACTTCTCAAGAGAACATCTCTTGAAGACTACTTCTCCAACCTTGAATTCTCCTTCAGATGGAACCGCCTCTTGGC
CGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGG
AAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAA
CATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTT
CTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGT
CTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTC
ACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG
Protein sequenceShow/hide protein sequence
MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKH
VAPRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY