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IVF0007115 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007115
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:19280697..19281452
RNA-Seq ExpressionIVF0007115
SyntenyIVF0007115
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038979.1 uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]2.72e-7864.59Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVITIGERIEFGV NG+I++PASE R MM+PKKKE ++HELSST+RV+ HVSSPT+GQTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL
                         ++GHSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VDTF ERY NKVCDVTTSMNTLFQIL RAGYL
Subjt:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL

Query:  SLRFNNDEG
        S RFNNDEG
Subjt:  SLRFNNDEG

KAA0063019.1 uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]6.66e-7463.59Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVIT+GE+IEFGV NG+I++PASE R MMTPKKKE ++HELSST+RV+ HVSSPT+GQTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  ------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRI
              ++ HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNP P HEGPAIN+VDTF +RY NKVCDVTTSMNTLFQIL RAGYLS RFNND+G  
Subjt:  ------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRI

Query:  LDAPTE
        L    E
Subjt:  LDAPTE

TYK16525.1 uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa]2.80e-7361.03Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFS+VITIGERIEFGV NG+IT+ +SE R MMT  KKE ++HELSST+RV+ HVSSPTM QTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  ------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFN
                     +GHS ENCFPLK+KVQSLVKA WLKFKK   +  +NQNPLPNHEGP INVVDTF ERY NK+CDVTTSMNTLFQIL   GYLS RFN
Subjt:  ------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFN

Query:  NDEGRILDAPTEA
        ND GR LDAPT +
Subjt:  NDEGRILDAPTEA

TYK28914.1 Gag-pro-like protein [Cucumis melo var. makuwa]9.91e-8675.28Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYSL-----IGHSTENCFPLKSKVQSLVKAR
        MVGSA  NFSDVITIGERIEFGV NG+IT+ +SE R MMTPKKKE ++HELSST+RV+ HV SP +GQTNYS      +G+STENCFPL++KVQSLVKA+
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYSL-----IGHSTENCFPLKSKVQSLVKAR

Query:  WLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA
        WLKFKKT  EP VNQNPLPN+EGP INVVDTF ERY N+VCDVTTSMN LFQILH AGYLS RFNNDEGR LD PT +
Subjt:  WLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA

XP_016903339.1 PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]6.82e-7262.2Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVITIGE IEFGV NG+I +P+SE R MMTPKKKE ++HELSST++V+ HVSSPT+GQ NYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL
                         ++GHSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VD F +RY NKVCDVTTSMNTLFQIL RAGYL
Subjt:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL

Query:  SLRFNNDEG
        S RFNNDEG
Subjt:  SLRFNNDEG

TrEMBL top hitse value%identityAlignment
A0A5A7T401 Retrotrans_gag domain-containing protein1.0e-5962.2Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVITIGE IEFGV NG+I +P+SE R MMTPKKKE ++HELSST++V+ HVSSPT+GQ NYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL
                         ++GHSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VD F +RY NKVCDVTTSMNTLFQIL RAGYL
Subjt:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL

Query:  SLRFNNDEG
        S RFNNDEG
Subjt:  SLRFNNDEG

A0A5A7TCG9 Uncharacterized protein2.6e-6364.59Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVITIGERIEFGV NG+I++PASE R MM+PKKKE ++HELSST+RV+ HVSSPT+GQTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL
                         ++GHSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VDTF ERY NKVCDVTTSMNTLFQIL RAGYL
Subjt:  -----------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYL

Query:  SLRFNNDEG
        S RFNNDEG
Subjt:  SLRFNNDEG

A0A5A7VBN6 Retrotrans_gag domain-containing protein4.9e-6263.59Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFSDVIT+GE+IEFGV NG+I++PASE R MMTPKKKE ++HELSST+RV+ HVSSPT+GQTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  ------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRI
              ++ HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNP P HEGPAIN+VDTF +RY NKVCDVTTSMNTLFQIL RAGYLS RFNND+G  
Subjt:  ------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRI

Query:  LDAPTE
        L    E
Subjt:  LDAPTE

A0A5D3CYF0 Retrotrans_gag domain-containing protein3.5e-6061.03Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------
        MVGSA  NFS+VITIGERIEFGV NG+IT+ +SE R MMT  KKE ++HELSST+RV+ HVSSPTM QTNYS                            
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS----------------------------

Query:  ------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFN
                     +GHS ENCFPLK+KVQSLVKA WLKFKK   +  +NQNPLPNHEGP INVVDTF ERY NK+CDVTTSMNTLFQIL   GYLS RFN
Subjt:  ------------LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFN

Query:  NDEGRILDAPTEA
        ND GR LDAPT +
Subjt:  NDEGRILDAPTEA

A0A5D3DZH7 Gag-pro-like protein8.6e-6775.28Show/hide
Query:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS-----LIGHSTENCFPLKSKVQSLVKAR
        MVGSA  NFSDVITIGERIEFGV NG+IT+ +SE R MMTPKKKE ++HELSST+RV+ HV SP +GQTNYS      +G+STENCFPL++KVQSLVKA+
Subjt:  MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYS-----LIGHSTENCFPLKSKVQSLVKAR

Query:  WLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA
        WLKFKKT  EP VNQNPLPN+EGP INVVDTF ERY N+VCDVTTSMN LFQILH AGYLS RFNNDEGR LD PT +
Subjt:  WLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAGTGCTTTGATTAACTTTTCTGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAACAATGGAAAGATCACTAATCCTGCTTCAGAGCCAAGAAT
GATGATGACTCCAAAGAAAAAAGAAAGAAAAGTACATGAGTTGAGCTCGACTGAAAGAGTAATGACACATGTATCCTCACCAACAATGGGACAGACAAATTACTCTCTTA
TTGGACATTCTACGGAGAACTGTTTTCCTTTGAAATCTAAAGTACAAAGTCTAGTCAAGGCCAGATGGTTGAAATTCAAGAAGACAAAAGGAGAGCCTTACGTTAACCAA
AACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTCATAGAAAGATACATGAATAAGGTGTGTGATGTAACTACTTCAATGAATACGCTTTTCCA
AATCCTTCATAGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGGGAGAATATTGGATGCGCCAACGGAAGCAGTGTTTATTCCAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAGTGCTTTGATTAACTTTTCTGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAACAATGGAAAGATCACTAATCCTGCTTCAGAGCCAAGAAT
GATGATGACTCCAAAGAAAAAAGAAAGAAAAGTACATGAGTTGAGCTCGACTGAAAGAGTAATGACACATGTATCCTCACCAACAATGGGACAGACAAATTACTCTCTTA
TTGGACATTCTACGGAGAACTGTTTTCCTTTGAAATCTAAAGTACAAAGTCTAGTCAAGGCCAGATGGTTGAAATTCAAGAAGACAAAAGGAGAGCCTTACGTTAACCAA
AACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTCATAGAAAGATACATGAATAAGGTGTGTGATGTAACTACTTCAATGAATACGCTTTTCCA
AATCCTTCATAGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGGGAGAATATTGGATGCGCCAACGGAAGCAGTGTTTATTCCAACCTAA
Protein sequenceShow/hide protein sequence
MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYSLIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQ
NPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEAVFIPT