CuGenDBv2

Gene ID	IVF0007147
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2
Genome location	chr11:30291165..30293895
RNA-Seq Expression	IVF0007147
Synteny	IVF0007147
Gene Ontology terms	NA
InterPro domains	IPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039964.1 protein SPA [Cucumis melo var. makuwa]

1.49e-85

93.55

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLGQESIDILWG
        TCGGSGLGYCSRCLG      + G
Subjt:  TCGGSGLGYCSRCLGQESIDILWG

KAG6593729.1 hypothetical protein SDJN03_13205, partial [Cucurbita argyrosperma subsp. sororia]

8.49e-77

83.87

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPI+L A+QLKATDSNGV P  N+TS PRLSIPKPSWIVRTESNVRREKRKKPDPPC IC+GSGRVDCH CCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLGQESIDILWG
         CGGSGLGYCSRCLG      + G
Subjt:  TCGGSGLGYCSRCLGQESIDILWG

XP_008460069.1 PREDICTED: uncharacterized protein LOC103498991 [Cucumis melo]

1.43e-83

91.94

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPIIL AVQLKATDSNGVTPSRNST LPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLGQESIDILWG
        TCGGSGLGYCSRCLG      + G
Subjt:  TCGGSGLGYCSRCLGQESIDILWG

XP_023513705.1 uncharacterized protein LOC111778233 [Cucurbita pepo subsp. pepo]

2.97e-77

84.68

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPI+L A+QLKATDSNGV P  NSTS PRLSIPKPSWIVRTESNVRREKRKKPDPPC IC+GSGRVDCH CCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLGQESIDILWG
         CGGSGLGYCSRCLG      + G
Subjt:  TCGGSGLGYCSRCLGQESIDILWG

XP_038906930.1 uncharacterized protein LOC120092800 [Benincasa hispida]

1.34e-80

87.9

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAA TTPI+L AVQLKATDSNGVTP RNST LPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKG+WP+WCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLGQESIDILWG
        TCGGSGLGYCSRCLG      + G
Subjt:  TCGGSGLGYCSRCLGQESIDILWG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBQ1 Uncharacterized protein

5.7e-57

92.17

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAAR TPIIL A+QLKATDSNGVTPS NS  LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLG
        TCGGSGLGYCSRCLG
Subjt:  TCGGSGLGYCSRCLG

A0A1S3CCX7 uncharacterized protein LOC103498991

2.7e-62

98.26

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPIIL AVQLKATDSNGVTPSRNST LPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLG
        TCGGSGLGYCSRCLG
Subjt:  TCGGSGLGYCSRCLG

A0A5D3DLS3 Protein SPA

8.3e-64

100

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLG
        TCGGSGLGYCSRCLG
Subjt:  TCGGSGLGYCSRCLG

A0A6J1HHM2 uncharacterized protein LOC111464401

7.5e-57

90.43

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAARTTPI+L AVQLKATDSNGV P  NSTS PRLSIPKPSWIVRTESNVRREKRKKPDPPC IC+GSGRVDCH CCGRGRTN VHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLG
         CGGSGLGYCSRCLG
Subjt:  TCGGSGLGYCSRCLG

A0A6J1KM14 uncharacterized protein LOC111494509

7.5e-57

89.57

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Query:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR
        MAA TT I+L A+QLKATDSNGV P  NSTS PRLSIPKPSWIVRTESNVRREKRKKPDPPC IC+GSGRVDCH+CCGRGRTNFVHLEMLPKGEWPKWCR
Subjt:  MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCR

Query:  TCGGSGLGYCSRCLG
        TCGGSGLGYCSRCLG
Subjt:  TCGGSGLGYCSRCLG

SwissProt top hits

e value

%identity

Alignment

A0A2K3DZC4 Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic

5.4e-04

33.33

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Query:  KKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEML----------------PKGEW--PKWCRTCGGSGLGYCSRCLG
        KK   PC +C G+G + C  C G GR   V  + L                P G    P+ C+ C G+GL  CS+C G
Subjt:  KKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEML----------------PKGEW--PKWCRTCGGSGLGYCSRCLG

Arabidopsis top hits

e value

%identity

Alignment

AT3G17668.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein

1.4e-31

60.64

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Query:  GVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCRTCGGSGLGYCSRCLG
        GV  S+++    RL + KPSWIVRT+S  +   + K    CVIC+GSGRVDC +CCG+GRTN V +EMLP+GEWPKWC++CGGSGL  CSRCLG
Subjt:  GVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCRTCGGSGLGYCSRCLG

Sequences

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CDS sequence

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ATGGCTGCGAGAACGACGCCGATTATTCTTCTAGCTGTTCAATTGAAAGCCACAGACTCAAATGGGGTAACTCCTTCTCGGAACTCAACCTCTCTTCCTCGTCTATCAAT
TCCAAAGCCTTCTTGGATCGTCAGAACAGAGTCAAATGTTAGGAGAGAAAAAAGAAAGAAGCCAGATCCACCTTGTGTGATATGCAATGGAAGTGGTAGAGTTGACTGTC
ACCATTGTTGTGGAAGAGGGAGGACAAATTTTGTTCACTTAGAAATGCTTCCGAAAGGGGAATGGCCAAAATGGTGTAGGACTTGTGGCGGGAGTGGTCTCGGCTACTGC
TCCCGTTGCCTGGGACAGGAGAGTATCGATATATTATGGGGTTCCAATTCATGA

mRNA sequence

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CTAAATTGTTACAAATTTAGCGGCTGAGTCACCGCCATAAAACGAAACGGCAAAACTGAGCGACGGAGGTCGTCGGCCGGTTTTGGATGGCTGCGAGAACGACGCCGATT
ATTCTTCTAGCTGTTCAATTGAAAGCCACAGACTCAAATGGGGTAACTCCTTCTCGGAACTCAACCTCTCTTCCTCGTCTATCAATTCCAAAGCCTTCTTGGATCGTCAG
AACAGAGTCAAATGTTAGGAGAGAAAAAAGAAAGAAGCCAGATCCACCTTGTGTGATATGCAATGGAAGTGGTAGAGTTGACTGTCACCATTGTTGTGGAAGAGGGAGGA
CAAATTTTGTTCACTTAGAAATGCTTCCGAAAGGGGAATGGCCAAAATGGTGTAGGACTTGTGGCGGGAGTGGTCTCGGCTACTGCTCCCGTTGCCTGGGACAGGAGAGT
ATCGATATATTATGGGGTTCCAATTCATGAAGATGGAGAATAATGAAAGTAAGGATCCTAAAAAGTACGACGATCAAACAAAGCAACATCCCGGAAGTGCAAATCCAGAA
ATTTGAGACAAGTTTACAATGGTGTGACACTAAAATACTAATTCAAACTGATGAATTCCTGTTTAGTTTAAAAAAAAAAAGTTGTAATATAGTTGGGGTATATGATAAAC
TTTTGCCCCTGTTTTAGGATGATTTTTTAGTTAATAATATTGTAATTGTCCAGACGTGGTTGTGACTCAAATCTATTTTTATGGTCATTTGGAAAGTATCAATTCCA

Protein sequence

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MAARTTPIILLAVQLKATDSNGVTPSRNSTSLPRLSIPKPSWIVRTESNVRREKRKKPDPPCVICNGSGRVDCHHCCGRGRTNFVHLEMLPKGEWPKWCRTCGGSGLGYC
SRCLGQESIDILWGSNS

IVF0007147 (gene) of Melon (IVF77) v1 genome