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IVF0007180 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007180
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNase H domain-containing protein
Genome locationchr05:6527614..6534306
RNA-Seq ExpressionIVF0007180
SyntenyIVF0007180
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031982.1 hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa]2.08e-54100Show/hide
Query:  SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
        SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
Subjt:  SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
ONI12089.1 hypothetical protein PRUPE_4G143500 [Prunus persica]1.26e-0433.78Show/hide
Query:  QIKSSVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAE
        + K +VD A  P     G G V+RNDKGE++ A A     +   +  +IMA +FG+      GC  + ++SD++
Subjt:  QIKSSVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAE
TrEMBL top hitse value%identityAlignment
A0A5A7SLR6 RNase H domain-containing protein3.8e-42100Show/hide
Query:  SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
        SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
Subjt:  SVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP
A0A803NRA4 Uncharacterized protein5.3e-0428.99Show/hide
Query:  AKVAHVINDE-EWNVNELRKWLDEDDIMTVLGILQKKMLKKLSTTDSVFWHSVL----IYLGGPKQIKSSVDVACSPNNK-GNGYGVVLRNDKGEIVLAQ
        A V+ +++D  EWN+  L++ + EDDI  +LGI      +K    D   WH  +        G K I+     A + N   G G   V+R++ G ++ A+
Subjt:  AKVAHVINDE-EWNVNELRKWLDEDDIMTVLGILQKKMLKKLSTTDSVFWHSVL----IYLGGPKQIKSSVDVACSPNNK-GNGYGVVLRNDKGEIVLAQ

Query:  AFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSD
        A  +   F +   +++AI  GL+LV+ +     +V SD
Subjt:  AFCRGESFLVEAGKIMAIMFGLHLVEGLGCFEVWVQSD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCTAATGGAGTGAGAGGTAGTGGTGTAGTGGACTCAGTGGGAGGTGGTGGTAGAATAGATTCGATGGAATGTGGGGGTAAAGTGGACTCGGTGGGATGTAGGGG
TAAATTGAACTTGATTGGAGGTGGTATAAACCATTGTCATCTTCACAACATGGAGATCCAGGACATGGATTTTGAAAAAGGAAAAAGGAAAGCAAGTATGGAGGTGGACC
CATTGGAGGAGCAACATAATGGGGCAGACACAAAACTAAGCCCAAATGTGAATAGAGATCGTGAGTTATATTTGGGAAACATTCTTGGAGTCAAGGTGTTTTCGGATCTT
AGCCGATATTTGGGCCTTATTGCTAAGGTTGCTCATGTCATTAATGATGAGGAGTGGAATGTGAATGAATTGAGGAAATGGCTCGATGAGGACGATATTATGACTGTGTT
AGGCATTTTACAAAAAAAAATGCTAAAGAAGCTTTCTACTACTGATTCTGTGTTTTGGCATAGTGTGCTGATTTATTTAGGAGGACCGAAACAAATAAAATCGAGTGTGG
ATGTTGCATGTAGTCCAAACAACAAGGGTAATGGGTATGGTGTTGTGCTTCGCAATGATAAGGGTGAAATTGTTTTGGCTCAAGCTTTTTGTAGAGGTGAAAGCTTTCTG
GTGGAAGCGGGCAAGATCATGGCAATAATGTTTGGTCTTCACTTGGTTGAAGGTCTTGGGTGTTTTGAGGTTTGGGTTCAATCAGATGCAGAGATTGAAGGTGAGAAGGT
TCAAGTATATTTCCAAGAAGGCTCCCTATTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCTAATGGAGTGAGAGGTAGTGGTGTAGTGGACTCAGTGGGAGGTGGTGGTAGAATAGATTCGATGGAATGTGGGGGTAAAGTGGACTCGGTGGGATGTAGGGG
TAAATTGAACTTGATTGGAGGTGGTATAAACCATTGTCATCTTCACAACATGGAGATCCAGGACATGGATTTTGAAAAAGGAAAAAGGAAAGCAAGTATGGAGGTGGACC
CATTGGAGGAGCAACATAATGGGGCAGACACAAAACTAAGCCCAAATGTGAATAGAGATCGTGAGTTATATTTGGGAAACATTCTTGGAGTCAAGGTGTTTTCGGATCTT
AGCCGATATTTGGGCCTTATTGCTAAGGTTGCTCATGTCATTAATGATGAGGAGTGGAATGTGAATGAATTGAGGAAATGGCTCGATGAGGACGATATTATGACTGTGTT
AGGCATTTTACAAAAAAAAATGCTAAAGAAGCTTTCTACTACTGATTCTGTGTTTTGGCATAGTGTGCTGATTTATTTAGGAGGACCGAAACAAATAAAATCGAGTGTGG
ATGTTGCATGTAGTCCAAACAACAAGGGTAATGGGTATGGTGTTGTGCTTCGCAATGATAAGGGTGAAATTGTTTTGGCTCAAGCTTTTTGTAGAGGTGAAAGCTTTCTG
GTGGAAGCGGGCAAGATCATGGCAATAATGTTTGGTCTTCACTTGGTTGAAGGTCTTGGGTGTTTTGAGGTTTGGGTTCAATCAGATGCAGAGATTGAAGGTGAGAAGGT
TCAAGTATATTTCCAAGAAGGCTCCCTATTTCCATGA
Protein sequenceShow/hide protein sequence
MVPNGVRGSGVVDSVGGGGRIDSMECGGKVDSVGCRGKLNLIGGGINHCHLHNMEIQDMDFEKGKRKASMEVDPLEEQHNGADTKLSPNVNRDRELYLGNILGVKVFSDL
SRYLGLIAKVAHVINDEEWNVNELRKWLDEDDIMTVLGILQKKMLKKLSTTDSVFWHSVLIYLGGPKQIKSSVDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFL
VEAGKIMAIMFGLHLVEGLGCFEVWVQSDAEIEGEKVQVYFQEGSLFP