; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0007307 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007307
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed DNA polymerase
Genome locationchr08:30739480..30755053
RNA-Seq ExpressionIVF0007307
SyntenyIVF0007307
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A
IPR020046 - 5'-3' exonuclease, alpha-helical arch, N-terminal
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144345.1 uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus]1.93e-11592.19Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS
        RL+KRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSASTR Q 
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS

Query:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLE MPSHVAVVFDHDG
Subjt:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

XP_008449676.1 PREDICTED: DNA polymerase I [Cucumis melo]1.00e-127100Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
        RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM

Query:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
Subjt:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

XP_011653865.1 uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus]7.74e-11691.71Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS
        RL+KRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSASTR Q 
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS

Query:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDGK
        MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLE MPSHVAVVFDHDG 
Subjt:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDGK

XP_031739929.1 uncharacterized protein LOC101222649 isoform X3 [Cucumis sativus]1.59e-11692.19Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS
        RL+KRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSASTR Q 
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQS

Query:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLE MPSHVAVVFDHDG
Subjt:  MVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

XP_038899896.1 DNA polymerase I isoform X5 [Benincasa hispida]1.58e-9780.32Show/hide
Query:  LMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQ
        LMA HHLHTATASASHICRNFLGF+FTSKFP PFRFS+SSS +       HS PS S+LLSPKGYCSSSGSI+++N +D+ AT+HGSSAS+R Q M+QFQ
Subjt:  LMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQ

Query:  DSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDGK
        DSLS+SLT+KE+TGI+NP+DARVMLIDGTS+I+RAYYKLLAKLHHG+LSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG 
Subjt:  DSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDGK

TrEMBL top hitse value%identityAlignment
A0A0A0KYZ2 Apocytochr_F_N domain-containing protein3.4e-8189.33Show/hide
Query:  LRLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQ
        +RL+KRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSASTR Q
Subjt:  LRLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQ

Query:  SMVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVL
         MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL+ ++L
Subjt:  SMVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVL

A0A1S3BMJ7 DNA-directed DNA polymerase5.0e-101100Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
        RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM

Query:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
Subjt:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

A0A5A7V6D7 DNA polymerase I9.8e-7398.65Show/hide
Query:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
        RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM
Subjt:  RLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSM

Query:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLH
        VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLL  LH
Subjt:  VQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLH

A0A6J1F3S3 DNA-directed DNA polymerase2.3e-6975.81Show/hide
Query:  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQD
        MA HHLHTATASASHICRNFLG++FTSKF  P RFS+SSS +       H FPS S+LL PKGYCSSS S+N++  +D+ ATYHGS AS+  Q M+Q QD
Subjt:  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQD

Query:  SLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        SLSNS T KE+T ID P+DARVMLIDGTSII+RAY+KLLAKLHHGHLSHADGNGDWVLTIFTA+SLIVDVLEFMPSHVAVVFDHDG
Subjt:  SLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

A0A6J1HVF9 DNA-directed DNA polymerase1.6e-7076.88Show/hide
Query:  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQD
        MA HHLHTATASASHICRNFLG++FTSKF  P RFS+SSS +       H FPS S+LLSPKGYCSSS S+N++  +D+ ATYHGS AS+  Q M+Q QD
Subjt:  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRI-------HSFPS-SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQD

Query:  SLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        SLSNS T KE+T ID+P+DARVMLIDGTSII+RAY+KLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
Subjt:  SLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein1.7e-2953.73Show/hide
Query:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG
        SL  S K YCSS      SN   + +T    S     QS+            FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL+HADG
Subjt:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG

Query:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        N DWVLTIF++LSL++DVL+F+PSHVAVVFDHDG
Subjt:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

AT3G52050.2 5'-3' exonuclease family protein1.7e-2953.73Show/hide
Query:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG
        SL  S K YCSS      SN   + +T    S     QS+            FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL+HADG
Subjt:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG

Query:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        N DWVLTIF++LSL++DVL+F+PSHVAVVFDHDG
Subjt:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

AT3G52050.3 5'-3' exonuclease family protein1.7e-2953.73Show/hide
Query:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG
        SL  S K YCSS      SN   + +T    S     QS+            FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL+HADG
Subjt:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG

Query:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        N DWVLTIF++LSL++DVL+F+PSHVAVVFDHDG
Subjt:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

AT3G52050.4 5'-3' exonuclease family protein1.7e-2953.73Show/hide
Query:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG
        SL  S K YCSS      SN   + +T    S     QS+            FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL+HADG
Subjt:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG

Query:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        N DWVLTIF++LSL++DVL+F+PSHVAVVFDHDG
Subjt:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG

AT3G52050.5 5'-3' exonuclease family protein1.7e-2953.73Show/hide
Query:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG
        SL  S K YCSS      SN   + +T    S     QS+            FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL+HADG
Subjt:  SLLLSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADG

Query:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG
        N DWVLTIF++LSL++DVL+F+PSHVAVVFDHDG
Subjt:  NGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATACAACTCCTACAAATCTCGCAACAAAGTTCAATACATAGGAGTGTTGCGGTTGATGAAACGCTTGGGCGGTTCTCCCTCACGTCTCATGGCCTCCCACCATCT
TCACACTGCTACTGCTAGTGCTTCCCATATCTGCAGAAATTTCTTGGGATTCGTTTTCACCTCCAAATTTCCCGTTCCTTTTCGTTTCTCTACTTCTTCTTCGAGGATTC
ATTCTTTTCCCTCCTCCCTTCTGCTATCCCCAAAGGGTTACTGCAGTTCATCCGGAAGTATAAATTCTTCCAATATCATAGATACTATTGCAACTTATCATGGTAGTTCT
GCATCTACTAGACGCCAGTCAATGGTGCAATTCCAAGATTCATTGTCGAACTCGCTTACGTTCAAAGAAGATACTGGAATTGATAATCCTGCAGATGCTAGAGTCATGCT
CATTGATGGCACATCAATCATTTTTAGAGCATACTACAAGCTTTTGGCAAAGCTTCATCATGGCCATTTATCACATGCGGATGGAAATGGAGATTGGGTGCTAACTATAT
TTACTGCTTTGTCACTTATTGTTGATGTTCTGGAGTTTATGCCTTCTCATGTGGCGGTTGTGTTCGACCATGATGGTAAGATATGGGATTCAAAATTGTCACATTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATACAACTCCTACAAATCTCGCAACAAAGTTCAATACATAGGAGTGTTGCGGTTGATGAAACGCTTGGGCGGTTCTCCCTCACGTCTCATGGCCTCCCACCATCT
TCACACTGCTACTGCTAGTGCTTCCCATATCTGCAGAAATTTCTTGGGATTCGTTTTCACCTCCAAATTTCCCGTTCCTTTTCGTTTCTCTACTTCTTCTTCGAGGATTC
ATTCTTTTCCCTCCTCCCTTCTGCTATCCCCAAAGGGTTACTGCAGTTCATCCGGAAGTATAAATTCTTCCAATATCATAGATACTATTGCAACTTATCATGGTAGTTCT
GCATCTACTAGACGCCAGTCAATGGTGCAATTCCAAGATTCATTGTCGAACTCGCTTACGTTCAAAGAAGATACTGGAATTGATAATCCTGCAGATGCTAGAGTCATGCT
CATTGATGGCACATCAATCATTTTTAGAGCATACTACAAGCTTTTGGCAAAGCTTCATCATGGCCATTTATCACATGCGGATGGAAATGGAGATTGGGTGCTAACTATAT
TTACTGCTTTGTCACTTATTGTTGATGTTCTGGAGTTTATGCCTTCTCATGTGGCGGTTGTGTTCGACCATGATGGTAAGATATGGGATTCAAAATTGTCACATTACTGA
Protein sequenceShow/hide protein sequence
MIYNSYKSRNKVQYIGVLRLMKRLGGSPSRLMASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSSRIHSFPSSLLLSPKGYCSSSGSINSSNIIDTIATYHGSS
ASTRRQSMVQFQDSLSNSLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEFMPSHVAVVFDHDGKIWDSKLSHY