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IVF0007368 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007368
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:18104142..18106134
RNA-Seq ExpressionIVF0007368
SyntenyIVF0007368
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]8.94e-1445.76Show/hide
Query:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-------------------------------PGGNNFHNKGSRG---------RGR
        P  +LIS VLLGLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                                G  N  NK   G         RG 
Subjt:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-------------------------------PGGNNFHNKGSRG---------RGR

Query:  GRNKPTCQVCEKYEHFVL
          N PTCQ+C KY H  L
Subjt:  GRNKPTCQVCEKYEHFVL

KGN44034.1 hypothetical protein Csa_011882 [Cucumis sativus]1.45e-4558.05Show/hide
Query:  VLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------------GGNNFHNKGSRGRGRGR-NKPTCQVCEK
        VLL LDEVYN +TVVIQGK +ISWLDMQS+LLIF+K                                    GGNNFHN GSRG GRGR NKPTCQVC K
Subjt:  VLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------------GGNNFHNKGSRGRGRGR-NKPTCQVCEK

Query:  YEHFVLHNINTSTPSSSNQNPTAFVTTYNSNPFATAELLLILTGMLIVLSMLLLEMVISCKFHVLEIQIYLMEK
        Y H  L NINT TP +SNQNPT FVTTYN+NPFAT E          VLSMLLLEMV+S KF  L IQIYLM K
Subjt:  YEHFVLHNINTSTPSSSNQNPTAFVTTYNSNPFATAELLLILTGMLIVLSMLLLEMVISCKFHVLEIQIYLMEK

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.91e-1537.43Show/hide
Query:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP--------------------------------------GGNNFHNKGSRG-----
        P  + IS  LLGLDEVYN V  VIQGKP+ISW+DMQS+LL F+K                                       G N  +++G RG     
Subjt:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP--------------------------------------GGNNFHNKGSRG-----

Query:  --RGRGR-NKPTCQVCEKYEHFVLHNINT----------------STPSSSNQNPTAFVTTYNSNPFATAE
          RG+GR NKPTCQVCEKY H  L   N                 S+  S + N T  VT  + N FATA+
Subjt:  --RGRGR-NKPTCQVCEKYEHFVLHNINT----------------STPSSSNQNPTAFVTTYNSNPFATAE

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.37e-1440.13Show/hide
Query:  GLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------GGNNFHNKGSRG---------RGRGRNKPTCQVCEKY
        GLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                              G  N  NK   G         RG   N PTCQ+C KY
Subjt:  GLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------GGNNFHNKGSRG---------RGRGRNKPTCQVCEKY

Query:  EHFVL-----HNINTSTPSSSNQN-----------PTAFVTTYNSNPFATAE
         H  L      N   S+P   N+N           P  FV+T N+ PFAT +
Subjt:  EHFVL-----HNINTSTPSSSNQN-----------PTAFVTTYNSNPFATAE

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]1.15e-1440.13Show/hide
Query:  GLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------GGNNFHNKGSRG---------RGRGRNKPTCQVCEKY
        GLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                              G  N  NK   G         RG   N PTCQ+C KY
Subjt:  GLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKP-----------------------------GGNNFHNKGSRG---------RGRGRNKPTCQVCEKY

Query:  EHFVL-----HNINTSTPSSSNQN-----------PTAFVTTYNSNPFATAE
         H  L      N   S+P   N+N           P  FV+T N+ PFAT +
Subjt:  EHFVL-----HNINTSTPSSSNQN-----------PTAFVTTYNSNPFATAE

TrEMBL top hitse value%identityAlignment
A0A0A0K542 Uncharacterized protein5.8e-3558.05Show/hide
Query:  VLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------------PGGNNFHNKGSRGRGRG-RNKPTCQVCEK
        VLL LDEVYN +TVVIQGK +ISWLDMQS+LLIF+K                                    GGNNFHN GSRG GRG RNKPTCQVC K
Subjt:  VLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------------PGGNNFHNKGSRGRGRG-RNKPTCQVCEK

Query:  YEHFVLHNINTSTPSSSNQNPTAFVTTYNSNPFATAELLLILTGMLIVLSMLLLEMVISCKFHVLEIQIYLMEK
        Y H  L NINT TP +SNQNPT FVTTYN+NPFAT E          VLSMLLLEMV+S KF  L IQIYLM K
Subjt:  YEHFVLHNINTSTPSSSNQNPTAFVTTYNSNPFATAELLLILTGMLIVLSMLLLEMVISCKFHVLEIQIYLMEK

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X13.1e-1237.5Show/hide
Query:  DDPLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------PGGNNFHNKGSRG---------RGR
        +D L  ++     GLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                              G  N  NK   G         RG 
Subjt:  DDPLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------PGGNNFHNKGSRG---------RGR

Query:  GRNKPTCQVCEKYEHFVL-----HNINTSTPSSSNQ-----------NPTAFVTTYNSNPFATAELLL
          N PTCQ+C KY H  L      N   S+P   N+           NP  FV+T N+ PFAT + ++
Subjt:  GRNKPTCQVCEKYEHFVL-----HNINTSTPSSSNQ-----------NPTAFVTTYNSNPFATAELLL

A0A1S4E1V2 uncharacterized protein LOC107991581 isoform X33.1e-1237.5Show/hide
Query:  DDPLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------PGGNNFHNKGSRG---------RGR
        +D L  ++     GLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                              G  N  NK   G         RG 
Subjt:  DDPLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-----------------------------PGGNNFHNKGSRG---------RGR

Query:  GRNKPTCQVCEKYEHFVL-----HNINTSTPSSSNQ-----------NPTAFVTTYNSNPFATAELLL
          N PTCQ+C KY H  L      N   S+P   N+           NP  FV+T N+ PFAT + ++
Subjt:  GRNKPTCQVCEKYEHFVL-----HNINTSTPSSSNQ-----------NPTAFVTTYNSNPFATAELLL

A0A5A7SIT7 Uncharacterized protein1.9e-1439.88Show/hide
Query:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-------------------------------PGGNNFHNKGSRG---------RGR
        P  +LIS VLLGLDEVYNLV VVIQGKPDISWLDMQS LLIF+K                                G  N  NK   G         RG 
Subjt:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK-------------------------------PGGNNFHNKGSRG---------RGR

Query:  GRNKPTCQVCEKYEHFVLHNINT----------------STPSSSNQNPTAFVTTYNSNPFATAELLL
          N PTCQ+C KY H  L   N                 S+  S + NP  FV+T N+ PFAT + ++
Subjt:  GRNKPTCQVCEKYEHFVLHNINT----------------STPSSSNQNPTAFVTTYNSNPFATAELLL

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1236.93Show/hide
Query:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK--------------------------------------PGGNNFHNKG-------S
        P  + IS  LLGLDEVYN V  VIQGKP+ISW+DMQS+LL F+K                                       G N  +++G        
Subjt:  PLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDK--------------------------------------PGGNNFHNKG-------S

Query:  RGRGRGR-NKPTCQVCEKYEHFVLHNIN----------------TSTPSSSNQNPTAFVTTYNSNPFATAELLLIL
        RGRG+GR NKPTCQVCEKY H  L   N                 S+  S + N T  VT  + N FATA+ ++ L
Subjt:  RGRGRGR-NKPTCQVCEKYEHFVLHNIN----------------TSTPSSSNQNPTAFVTTYNSNPFATAELLLIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGCTCATTTCCAGATGATCCTCTCTGTTCCTTAATTTCTCTGGTCTTATTGGGGTTGGATGAAGTCTACAATCTTGTAACCGTTGTTATTCAGGGAAAACCCGA
CATCTCTTGGCTAGATATGCAATCGGATTTACTAATATTTGATAAACCAGGTGGTAACAACTTCCATAACAAGGGCAGTCGTGGTCGTGGCCGAGGAAGAAATAAACCAA
CGTGTCAAGTATGTGAAAAATATGAGCATTTTGTACTGCACAATATTAACACTTCCACTCCAAGTAGCTCAAATCAGAACCCCACTGCTTTTGTCACCACTTATAATAGT
AATCCCTTTGCAACGGCAGAGCTGTTATTGATTCTAACTGGTATGTTGATAGTATTGAGCATGTTATTGTTGGAAATGGTAATAAGCTGCAAATTTCATGTATTGGAAAT
TCAAATTTATCTGATGGAAAAAGTAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGCTCATTTCCAGATGATCCTCTCTGTTCCTTAATTTCTCTGGTCTTATTGGGGTTGGATGAAGTCTACAATCTTGTAACCGTTGTTATTCAGGGAAAACCCGA
CATCTCTTGGCTAGATATGCAATCGGATTTACTAATATTTGATAAACCAGGTGGTAACAACTTCCATAACAAGGGCAGTCGTGGTCGTGGCCGAGGAAGAAATAAACCAA
CGTGTCAAGTATGTGAAAAATATGAGCATTTTGTACTGCACAATATTAACACTTCCACTCCAAGTAGCTCAAATCAGAACCCCACTGCTTTTGTCACCACTTATAATAGT
AATCCCTTTGCAACGGCAGAGCTGTTATTGATTCTAACTGGTATGTTGATAGTATTGAGCATGTTATTGTTGGAAATGGTAATAAGCTGCAAATTTCATGTATTGGAAAT
TCAAATTTATCTGATGGAAAAAGTAAAATAA
Protein sequenceShow/hide protein sequence
MKGSFPDDPLCSLISLVLLGLDEVYNLVTVVIQGKPDISWLDMQSDLLIFDKPGGNNFHNKGSRGRGRGRNKPTCQVCEKYEHFVLHNINTSTPSSSNQNPTAFVTTYNS
NPFATAELLLILTGMLIVLSMLLLEMVISCKFHVLEIQIYLMEKVK