CuGenDBv2

Gene ID	IVF0007404
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CCHC-type domain-containing protein
Genome location	chr08:27145681..27146106
RNA-Seq Expression	IVF0007404
Synteny	IVF0007404
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0042384.1 pol polyprotein [Cucumis melo var. makuwa]

7.29e-74

85.11

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWD LQKKYDTEEA  KKY +++YLRY+M DDK +EAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLPPLWKDFKNTLRHKTKEF LESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE RK DKKEEVNAIP+KKPT +LK DLK KGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

KAA0049683.1 uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa]

4.86e-77

87.94

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEAR KKYA+S+YLRYQMTDD+FVEAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLP LWKDFKNTLR+KTKEF LESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE RK DKKEEVNAIP+KK T VL+ DLKPKGNK+K
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

KAA0065758.1 uncharacterized protein E6C27_scaffold37G00490 [Cucumis melo var. makuwa]

5.03e-74

85.11

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWD LQKKYDTE A  KKYA+S+YLRYQMTDDK+VEA SHEIQKIAHEIIS+GMPLDDQFQVAVIIDKLP LWKDFKN LRHKTKEF LESLI 
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE RK DKKEEVNAI +KKPT VLK+DLK KGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

KAA0067915.1 putative Polyprotein [Cucumis melo var. makuwa]

1.84e-87

98.58

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTD+KFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RLMIEEEVRK DKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

TYK04299.1 uncharacterized protein E5676_scaffold527G00280 [Cucumis melo var. makuwa]

8.93e-92

100

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TG34 Pol polyprotein

4.4e-58

85.11

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWD LQKKYDTEEA  KKY +++YLRY+M DDK +EAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLPPLWKDFKNTLRHKTKEF LESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE RK DKKEEVNAIP+KKPT +LK DLK KGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

A0A5A7VQD4 Putative Polyprotein

1.2e-68

98.58

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTD+KFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RLMIEEEVRK DKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

A0A5D3BDS3 Uncharacterized protein

2.9e-57

83.69

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAK+VW+ LQKKYDTEEA  KKYA+S+YLRYQMTDD+ VEAQSHEIQKIAHEII+EGMPLDDQFQV +IIDKLP LWKDFKNTLRHKTKEF LE+LIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE +K+DKK+EVNAIP+KK T VLKSDLKPKGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

A0A5D3C1P9 Uncharacterized protein

1.1e-69

100

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

A0A5D3CPF2 Uncharacterized protein

3.6e-60

87.94

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Query:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT
        MTTAKEVWDTLQKKYDTEEAR KKYA+S+YLRYQMTDD+FVEAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLP LWKDFKNTLR+KTKEF LESLIT
Subjt:  MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLIT

Query:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK
        RL IEEE RK DKKEEVNAIP+KK T VL+ DLKPKGNK+K
Subjt:  RLMIEEEVRKQDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

1.4e-11

34.82

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Query:  AKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFL-LESLITRL
        AKE+WD L+  Y  +E++ K+  + +Y+ ++M +++ +  Q     KIA  I+S GM LD+ F V+ II K PP W+ F   L    +E+L +  L+ R+
Subjt:  AKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFL-LESLITRL

Query:  MIEEEVRKQDKK
          EEE+ +   K
Subjt:  MIEEEVRKQDKK

Sequences

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CDS sequence

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ATGACTACTGCAAAAGAAGTGTGGGACACGCTACAAAAGAAGTACGATACTGAGGAAGCAAGGTTGAAGAAGTACGCTATCAGCCAATACCTGAGATATCAAATGACTGA
TGACAAATTTGTGGAGGCACAATCACATGAAATCCAAAAAATAGCTCATGAGATTATCAGTGAAGGTATGCCACTCGATGATCAATTTCAAGTTGCTGTTATTATTGATA
AACTACCTCCACTATGGAAGGATTTCAAGAACACTCTAAGGCACAAAACCAAAGAGTTCTTACTGGAAAGCCTAATCACGAGGCTAATGATAGAGGAGGAAGTAAGGAAG
CAGGATAAAAAAGAAGAGGTGAACGCTATCCCCAAAAAGAAGCCCACTGTAGTTCTGAAATCAGACTTGAAGCCGAAAGGAAACAAGATGAAATGA

mRNA sequence

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Protein sequence

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MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDDKFVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRK
QDKKEEVNAIPKKKPTVVLKSDLKPKGNKMK

IVF0007404 (gene) of Melon (IVF77) v1 genome