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IVF0007452 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007452
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Genome locationchr05:21129250..21129441
RNA-Seq ExpressionIVF0007452
SyntenyIVF0007452
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051389.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]1.57e-0968Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK
        MD AKRK QTKTMDPTKRNN+AKTM+ TKR+ PTKR      KS GC G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK
KAA0060038.1 hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]2.84e-1071.15Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK
        MD  KRKSQTKTMDPTKRNNQAKTMD      LTKRN+PTKR S G  C G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK
TYK01567.1 putative transposable element-related protein [Cucumis melo var. makuwa]1.68e-0569.05Show/hide
Query:  MDPTKRNNQAKTMDLTKRNNPTKRKSLGCIGKEEEDDYLMKM
        MDPTKRNNQAKTMD TKRN+  KRKSLGC     EDD   K+
Subjt:  MDPTKRNNQAKTMDLTKRNNPTKRKSLGCIGKEEEDDYLMKM
TYK22248.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]2.71e-1070Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK
        MD AKRK QTKTMDPTKRNN+AKTM+ TKRN PTKR      KS GC G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK
TrEMBL top hitse value%identityAlignment
A0A5A7UD84 Collagen triple helix repeat protein8.7e-0668Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLGCIGK
        MD AKRK QTKTMDPTKRNN+AKTM+       TKRN P KRKS GC G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLGCIGK
A0A5A7UXT0 Uncharacterized protein2.3e-0671.15Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK
        MD  KRKSQTKTMDPTKRNNQAKTMD      LTKRN+PTKR S G  C G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK
A0A5D3DFL7 Collagen triple helix repeat protein2.3e-0670Show/hide
Query:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPT------KRKSLGCIGK
        MD AKRK QTKTMDPTKRNN+AKTM+ TKRN PT      KRKS GC G+
Subjt:  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPT------KRKSLGCIGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTGCGAAGAGGAAGAGTCAAACGAAAACTATGGATCCAACGAAGAGGAATAATCAGGCAAAAACTATGGATCTGACGAAGAGGAACAATCCAACGAAAAGGAA
GAGTCTGGGTTGTATAGGAAAAGAGGAAGAGGATGATTATTTGATGAAGATGATGGAGATGAGAGGAAAAGAAAACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTGCGAAGAGGAAGAGTCAAACGAAAACTATGGATCCAACGAAGAGGAATAATCAGGCAAAAACTATGGATCTGACGAAGAGGAACAATCCAACGAAAAGGAA
GAGTCTGGGTTGTATAGGAAAAGAGGAAGAGGATGATTATTTGATGAAGATGATGGAGATGAGAGGAAAAGAAAACCAATAA
Protein sequenceShow/hide protein sequence
MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKRKSLGCIGKEEEDDYLMKMMEMRGKENQ