CuGenDBv2

Gene ID	IVF0007470
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr12:18771371..18771796
RNA-Seq Expression	IVF0007470
Synteny	IVF0007470
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036924.1 retrotransposon protein [Cucumis melo var. makuwa]

6.39e-93

100

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]

8.93e-92

95.74

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+ALDQTNEQLR+IA+WPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]

4.27e-92

97.87

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

6.56e-92

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

3.38e-91

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRU1 Retrotransposon protein

2.9e-70

98.58

Show/hide

Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7T091 Retrotransposon protein

4.1e-72

100

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7TRV1 Retrotransposon protein

6.6e-70

97.87

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3CHA0 Retrotransposon protein

2.9e-70

98.58

Show/hide

Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3DCZ1 Retrotransposon protein

2.9e-70

98.58

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Query:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGG
ATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGC
CAGCACGCAACCTTGCAAATGACAACCACATGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTT
TTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

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Protein sequence

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MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHL
LSRMDDLRGFVLMPEDEREGFCRVLLRDIER

IVF0007470 (gene) of Melon (IVF77) v1 genome