CuGenDBv2

Gene ID	IVF0007487
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr09:6964146..6964704
RNA-Seq Expression	IVF0007487
Synteny	IVF0007487
Gene Ontology terms	GO:0007165 - signal transduction (biological process) GO:0003953 - NAD+ nucleosidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034017.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.05e-88

97.18

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLSAQKGHP FAFIQRLKSLANLIKPWQKEKFHSLTSAK+NIIREVDAIDKKELDTPLCQEDSD RLALKAELSDLSLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

KAA0050815.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.30e-89

95.07

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLS QKGHPGFAFIQRLK LANLIKPWQKEKFHSL+SAKE+IIREVDAIDKKELDTPLCQEDSD RLALKAELSDLSLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLI EIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

KAA0058104.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.30e-80

88.73

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        M+RWW+LS Q GHPGF+FIQRLKSLANLIKPWQKEKFHSLT+AKENIIREVDAIDK ELDTPL QE+S+ RLALKAEL+DLSLKESQFWFQRAKK+W+KE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDEN AFFHRICSSRQKRNLIHEIQ+EEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

KAA0063661.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.41e-83

92.25

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        M+RWWDLSAQKGH GFAFIQRLKSLANLIKPWQKEKFHSL+SAKENII+EVDAIDKKELDT LCQEDSD RLALKAEL+D SLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRN+IHEIQDEEGSIQNTN NISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.58e-88

100

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UB20 LINE-1 retrotransposable element ORF2 protein

8.5e-71

95.07

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLS QKGHPGFAFIQRLK LANLIKPWQKEKFHSL+SAKE+IIREVDAIDKKELDTPLCQEDSD RLALKAELSDLSLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLI EIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

A0A5A7VD46 LINE-1 retrotransposable element ORF2 protein

1.8e-68

92.25

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        M+RWWDLSAQKGH GFAFIQRLKSLANLIKPWQKEKFHSL+SAKENII+EVDAIDKKELDT LCQEDSD RLALKAEL+D SLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRN+IHEIQDEEGSIQNTN NISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

A0A5D3BT10 LINE-1 retrotransposable element ORF2 protein

5.3e-73

97.18

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLSAQKGHP FAFIQRLKSLANLIKPWQKEKFHSLTSAK+NIIREVDAIDKKELDTPLCQEDSD RLALKAELSDLSLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein

8.8e-76

100

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein

3.0e-68

90.85

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Query:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE
        M+RWW+LS Q GHPGF+FI+RLKSLANLIKPWQKEKFHSLTSAKENIIREVD+IDK ELDTPL QE+S+ RLALKAELSDLSLKESQFWFQRAKK+WLKE
Subjt:  MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKE

Query:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
        GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF
Subjt:  GDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

1.0e-04

21.97

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Query:  WDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRL--ALKAELSDLSLKESQFWFQRAKKIWLKEGD
        W+     G   F+  + LK+     K   ++ F ++    +  +  +++I  + L  P    DS  R+    + + +  +     F+ Q+++  WL++GD
Subjt:  WDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRL--ALKAELSDLSLKESQFWFQRAKKIWLKEGD

Query:  ENSAFFHRICSSRQKRNLIHEIQ-DEEGSIQN
         N+ FFH++  + Q +NLI  ++ D++  ++N
Subjt:  ENSAFFHRICSSRQKRNLIHEIQ-DEEGSIQN

Sequences

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CDS sequence

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ATGGATAGATGGTGGGATCTTTCAGCTCAAAAGGGTCACCCCGGTTTTGCCTTCATTCAAAGGCTCAAGTCCTTAGCTAACCTCATCAAACCTTGGCAAAAGGAGAAATT
TCACTCCCTCACTTCTGCTAAAGAAAACATTATCAGGGAAGTGGATGCCATTGATAAGAAGGAGCTGGATACACCGTTGTGTCAGGAGGACAGTGACTGTAGACTTGCTC
TAAAAGCTGAGCTCAGTGATCTTTCCCTTAAGGAATCTCAATTCTGGTTCCAAAGGGCTAAAAAGATTTGGCTTAAAGAGGGAGATGAAAATTCGGCCTTCTTTCACAGA
ATTTGTTCTTCCAGACAGAAGAGAAATCTCATCCACGAAATCCAGGATGAAGAAGGCTCCATTCAGAATACAAACAATAACATTTCCCTTGCCTTTAGTGGTCTCCCCTT
TGTGCCCCCTTCTTGGAGGAAGAAATAA

mRNA sequence

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Protein sequence

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MDRWWDLSAQKGHPGFAFIQRLKSLANLIKPWQKEKFHSLTSAKENIIREVDAIDKKELDTPLCQEDSDCRLALKAELSDLSLKESQFWFQRAKKIWLKEGDENSAFFHR
ICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFSGLPFVPPSWRKK

IVF0007487 (gene) of Melon (IVF77) v1 genome