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IVF0007528 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007528
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:8672163..8672876
RNA-Seq ExpressionIVF0007528
SyntenyIVF0007528
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035960.1 uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa]1.46e-9369.52Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEAR KLRRLRQ G IP+YIKEFTTLML+ E LSDKDALFHFRD LKDWAKIELDRRN++TLDDAIA  K LI++ FKEKKT +DEG+  E K + NSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
          K GK  FAN+ TTP  CFLC GPH  R+CPK+NKLSA+VANP +EEE P+KG+AQL AIRYLS M++D SKEPQ GGWLYVD   N+K AL +LD   
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEA
          NVM+PEEA
Subjt:  IENVMDPEEA

KAA0035961.1 uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa]1.83e-11272.15Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEAR KLRRLRQ G IP+YIKEFTTLML+ E LSDKDALFHFRDDLKDWAKIELDRRN++TLDDAIA    LI++  KEKK  +DEG+  E KK+GNSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
         GK GKA FANK T P  CFLC GPHW RDCPKKNKLSA+VANP +EEE P+KG+AQL  IRYLS M+++ SKEPQ GG LYVD   N+K AL +LD   
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
          NVMDPEEAK+LGLR TRRSDTEIKIISAK M+N G
Subjt:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]3.57e-4843.44Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSF--KEKKTCIDE-GDRSEAKKDGN
        +E+R KLRRLR TG I +Y+KEFTTLML+   L +K+ALF F+D LKDWAKIELDRRN+QTLDDAIA  + L++ S   K KK   ++ G + +  K+  
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSF--KEKKTCIDE-GDRSEAKKDGN

Query:  SKQGGK-------NGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML
         K GGK       NGK   A++G +   P+PCF+C GPHW RDCP +  L+A+V      ++       Q+ +++ +  M+ D + E +  G LY    +
Subjt:  SKQGGK-------NGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML

Query:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK
          K A T+ DT    N MD +EAK+LGL+    + T IK+++AK
Subjt:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK

KAA0064169.1 uncharacterized protein E6C27_scaffold548G00940 [Cucumis melo var. makuwa]3.04e-168100Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
        GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
        IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
Subjt:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG

XP_008455798.1 PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo]1.19e-4842.62Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSF--KEKKTCIDE-GDRSEAKKDGN
        +E+R KLRRLR TG I +Y+KEFTTLML+   L +K+ALF F+D LKDWAKIELDRRN+QTLDDAIA V+ L++ S   K KK   ++ G + +  K+  
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSF--KEKKTCIDE-GDRSEAKKDGN

Query:  SKQGGK-------NGKALFANKG---TTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML
         K GGK       NGK   A++G     P+PCF+C GPHW RDCP +  L+A+VA   + ++       Q+ +++ +  M+ + + E +  G LY    +
Subjt:  SKQGGK-------NGKALFANKG---TTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML

Query:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK
          K A+ + DT    N MD +EAK+LGL+    +   +K+++AK
Subjt:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK

TrEMBL top hitse value%identityAlignment
A0A5A7SY30 Retrotrans_gag domain-containing protein1.1e-7469.52Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEAR KLRRLRQ G IP+YIKEFTTLML+ E LSDKDALFHFRD LKDWAKIELDRRN++TLDDAIA  K LI++ FKEKKT +DEG+  E  K+ NSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
          K GK  FAN+ TTP  CFLC GPH  R+CPK+NKLSA+VANP +EEE P+KG+AQL AIRYLS M++D SKEPQ GGWLYVD   N+K AL +LD   
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEA
          NVM+PEEA
Subjt:  IENVMDPEEA

A0A5A7T2W8 Retrotrans_gag domain-containing protein9.6e-9072.15Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEAR KLRRLRQ G IP+YIKEFTTLML+ E LSDKDALFHFRDDLKDWAKIELDRRN++TLDDAIA    LI++  KEKK  +DEG+  E KK+GNSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
         GK GKA FANK T P  CFLC GPHW RDCPKKNKLSA+VANP +EEE P+KG+AQL  IRYLS M+++ SKEPQ GG LYVD   N+K AL +LD   
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
          NVMDPEEAK+LGLR TRRSDTEIKIISAK M+N G
Subjt:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG

A0A5A7TAA5 Uncharacterized protein9.7e-4243.44Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLS--FKEKKTCIDE-GDRSEAKKDGN
        +E+R KLRRLR TG I +Y+KEFTTLML+   L +K+ALF F+D LKDWAKIELDRRN+QTLDDAIA  + L++ S   K KK   ++ G + +  K+  
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLS--FKEKKTCIDE-GDRSEAKKDGN

Query:  SKQGG-------KNGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML
         K GG       KNGK   A++G +   P+PCF+C GPHW RDCP +  L+A+V      ++       Q+ +++ +  M+ D + E  + G LY    +
Subjt:  SKQGG-------KNGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML

Query:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK
          K A T+ DT    N MD +EAK+LGL+    + T IK+++AK
Subjt:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK

A0A5A7VEX8 Polyprotein1.3e-4143.03Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLS--FKEKKTCIDE-GDRSEAKKDGN
        +E+R KLRRLR TG I EY+KEFTTLML+   L +K+ALF F+D LKDWAKIELDRRN+QTLDDAIA  + L++ S   K KK   ++ G +S+  K+  
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLS--FKEKKTCIDE-GDRSEAKKDGN

Query:  SKQGG-------KNGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML
         + GG       KNGK   A++G +   P+PCF+C GPHW RDCP +  L+A+VA   + ++       Q+ +++ +  M+ + + E  + G LY    +
Subjt:  SKQGG-------KNGKALFANKGTT---PEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTML

Query:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK
          K A  + DT    N MD +EAK+LGL+    + T +K+++AK
Subjt:  NSKVALTILDTCTIENVMDPEEAKQLGLRITRRSDTEIKIISAK

A0A5D3BUR0 Retrotrans_gag domain-containing protein1.3e-131100Show/hide
Query:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
        MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ
Subjt:  MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQ

Query:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
        GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT
Subjt:  GGKNGKALFANKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCT

Query:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
        IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG
Subjt:  IENVMDPEEAKQLGLRITRRSDTEIKIISAKPMRNTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCACGAAGTAAGTTAAGGAGATTAAGACAAACGGGTGGCATTCCTGAGTATATAAAGGAGTTCACTACTCTAATGTTGAAAACAGAATATCTATCAGACAAGGA
TGCCCTCTTTCATTTTAGAGACGATCTTAAAGATTGGGCAAAAATTGAGCTCGATAGGCGCAACATACAAACTCTTGATGATGCTATTGCTACTGTCAAATTGCTCATTA
ACTTGTCCTTCAAGGAGAAGAAGACCTGTATAGATGAAGGAGATAGATCCGAGGCGAAGAAAGATGGGAACTCTAAACAAGGTGGGAAGAATGGAAAGGCCTTGTTTGCC
AACAAAGGTACAACTCCTGAACCTTGTTTCTTATGTAATGGTCCACATTGGGCGAGAGATTGCCCAAAGAAGAACAAGTTGAGTGCAATGGTGGCCAATCCATATGATGA
AGAGGAGGCACCCATGAAAGGGTCGGCACAGTTAAGTGCAATTCGATACCTAAGCCCCATGGAGAATGATTTCTCTAAAGAACCTCAGAACGGAGGTTGGTTGTACGTGG
ACACCATGCTCAACAGCAAGGTTGCTTTAACAATACTAGACACATGCACAATTGAAAATGTGATGGATCCTGAAGAGGCAAAGCAGCTAGGCCTCAGGATAACGAGGAGG
AGCGACACTGAGATAAAGATCATTAGTGCCAAACCAATGAGGAATACTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCACGAAGTAAGTTAAGGAGATTAAGACAAACGGGTGGCATTCCTGAGTATATAAAGGAGTTCACTACTCTAATGTTGAAAACAGAATATCTATCAGACAAGGA
TGCCCTCTTTCATTTTAGAGACGATCTTAAAGATTGGGCAAAAATTGAGCTCGATAGGCGCAACATACAAACTCTTGATGATGCTATTGCTACTGTCAAATTGCTCATTA
ACTTGTCCTTCAAGGAGAAGAAGACCTGTATAGATGAAGGAGATAGATCCGAGGCGAAGAAAGATGGGAACTCTAAACAAGGTGGGAAGAATGGAAAGGCCTTGTTTGCC
AACAAAGGTACAACTCCTGAACCTTGTTTCTTATGTAATGGTCCACATTGGGCGAGAGATTGCCCAAAGAAGAACAAGTTGAGTGCAATGGTGGCCAATCCATATGATGA
AGAGGAGGCACCCATGAAAGGGTCGGCACAGTTAAGTGCAATTCGATACCTAAGCCCCATGGAGAATGATTTCTCTAAAGAACCTCAGAACGGAGGTTGGTTGTACGTGG
ACACCATGCTCAACAGCAAGGTTGCTTTAACAATACTAGACACATGCACAATTGAAAATGTGATGGATCCTGAAGAGGCAAAGCAGCTAGGCCTCAGGATAACGAGGAGG
AGCGACACTGAGATAAAGATCATTAGTGCCAAACCAATGAGGAATACTGGATGA
Protein sequenceShow/hide protein sequence
MEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHFRDDLKDWAKIELDRRNIQTLDDAIATVKLLINLSFKEKKTCIDEGDRSEAKKDGNSKQGGKNGKALFA
NKGTTPEPCFLCNGPHWARDCPKKNKLSAMVANPYDEEEAPMKGSAQLSAIRYLSPMENDFSKEPQNGGWLYVDTMLNSKVALTILDTCTIENVMDPEEAKQLGLRITRR
SDTEIKIISAKPMRNTG