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IVF0007530 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007530
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHIG1 domain-containing protein
Genome locationchr12:23658008..23658725
RNA-Seq ExpressionIVF0007530
SyntenyIVF0007530
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573043.1 RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]8.01e-4791.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]3.52e-5097.56Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]4.27e-51100Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]8.01e-4791.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]1.18e-4893.9Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein2.1e-3697.56Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL484.3e-37100Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL484.3e-37100Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like7.5e-3491.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like2.2e-3391.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS E NLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B1.5e-0744.29Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATV-ALMVGTA
        S+     E F+ K R  NP+VPIG L TA VLT GL  F +GNSQ  +++M  ++  QG T+ A+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial3.4e-0746.55Show/hide
Query:  PLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENP
        PLVP+G LAT G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENP

Q7X843 RING-H2 finger protein ATL488.8e-3281.25Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial1.9e-1058.73Show/hide
Query:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VPIG LATA  LT GL SF RGNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A2.3e-0847.14Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGAT-VALMVGTA
        S+     E F+ K R  NP+VPIG L TA  LT GL  F RG S   Q++MR R+  QG T VA+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein6.3e-3381.25Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATATTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACT
ATGGAGAGAATCCTTGGCGGTCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATATTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACT
ATGGAGAGAATCCTTGGCGGTCGAGTTAA
Protein sequenceShow/hide protein sequence
MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS