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IVF0007588 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007588
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr03:6223019..6228660
RNA-Seq ExpressionIVF0007588
SyntenyIVF0007588
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025734.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.07e-8269.84Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEIIREGP AS PPVLDGK+YSYWK  +   IKTLDG+ WRALVAGYEPPM+T+D VS+ K E DWTD EEQA +GNARA N IFN VD NVFKL NSC+
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQ
          +EAWKILEV YEGT+KVK S LQLITSKFEVLKM+EDESVS+YN RVLEIAN+SLLL  KI ESKIVR+  R +++  ++ V   E+
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQ

KAA0033829.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.59e-7973.68Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEII+EGP AS P VLDGK+YSYWK  +   IKTLDG+ WRALVAGY+PPMI ++ VS+PK E DWTD EEQA IGNARAFN  FN VD NVFKL NSCS
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR
         A+EAWK LEV YEGT+KVK SRLQLITSKFE L+M EDE VS YN RVLEI NESL+LG KIP+SKIVR+
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR

KAA0066414.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.36e-8074.85Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        ME IREGP AS PPVL  K YSYWK H+   IKTLDGR WRALVAGY+PPM T+D V +PKSE +W D EEQAL+GNARA N IFN VD NVFKL NSC+
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR
         A+EAW++LEV YEGT+KVK SRLQLITSKFE LKMS+DE VS YN RVLEIANESLLLG KIPESKIVR+
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR

TYK22922.1 uncharacterized protein E5676_scaffold83126G00010 [Cucumis melo var. makuwa]2.26e-8474.36Show/hide
Query:  MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT-------------------------------------------------IDEPFTS
        MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT                                                 +DEPFTS
Subjt:  MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT-------------------------------------------------IDEPFTS

Query:  AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV
        AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV
Subjt:  AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV

XP_016900834.1 PREDICTED: uncharacterized protein LOC107991049 [Cucumis melo]4.26e-7863.01Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEIIR GP  S PPVLD K+YSY KAH+   +KTLDGR  R +VAG++PPMITID   +PKSE DWTD EEQA + N+ A NTIFN VD NVFKL NSCS
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRTRVVMKTINVVVNDSEQTYKQTDDDDELA
          ++AWKILEV YEGT KV+ SRLQLITSKFE LKM ED+SV++ N RVLEIA+ES  LG KI ESKIV +   +++++              DDDDELA
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRTRVVMKTINVVVNDSEQTYKQTDDDDELA

Query:  PKVTIVPEVTVADALVADT
        PKVT+VPEV V DAL+ADT
Subjt:  PKVTIVPEVTVADALVADT

TrEMBL top hitse value%identityAlignment
A0A5A7SJ95 Gag-pol polyprotein3.8e-6569.84Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEIIREGP AS PPVLDGK+YSYWK  +   IKTLDG+ WRALVAGYEPPM+T+D VS+ K E DWTD EEQA +GNARA N IFN VD NVFKL NSC+
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQ
          +EAWKILEV YEGT+KVK S LQLITSKFEVLKM+EDESVS+YN RVLEIAN+SLLL  KI ESKIVR+  R +++  ++ V   E+
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQ

A0A5A7UJR8 Putative mitochondrial protein1.0e-6568.56Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEIIREGP AS PPVLDGK+YSYWK  +   IKTLDG+ WRALVAGY+PPMIT + VS+PK E DWTD EEQA +GNARA N IFN VD N+FKL NSCS
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQTYKQT
         A+EAWK LEV YEGT+KVK SRLQLITSKFE L+M+EDESV  YN RVLEIANESLLLG KIP+SKIVR+  R + +  ++ V   E+ +  T
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQTYKQT

A0A5D3BPA2 Gag-pol polyprotein1.7e-6574.85Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        ME IREGP AS PPVL  K YSYWK H+   IKTLDGR WRALVAGY+PPM T+D V +PKSE +W D EEQAL+GNARA N IFN VD NVFKL NSC+
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR
         A+EAW++LEV YEGT+KVK SRLQLITSKFE LKMS+DE VS YN RVLEIANESLLLG KIPESKIVR+
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRR

A0A5D3BSP9 Gag-proteinase polyprotein1.7e-6568.56Show/hide
Query:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS
        MEIIREGP AS  PVLDGK+YSYWK  +   IKTLDG+ WRALVAGY+PPMIT++ VS+PK E DWTD EEQA +GNARA NTIFN VD NVFKL NSCS
Subjt:  MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCS

Query:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQTYKQT
         A+EAWK LEV  EGT+KVK SRLQLIT KFE L+M+EDESVS YN RVLEIANESLLLG KIP+SK+VR+  R   K +++ V  +E+ +  T
Subjt:  FAREAWKILEVTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRT-RVVMKTINVVVNDSEQTYKQT

A0A5D3DH34 Uncharacterized protein1.5e-6674.36Show/hide
Query:  MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT-------------------------------------------------IDEPFTS
        MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT                                                 +DEPFTS
Subjt:  MKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADT-------------------------------------------------IDEPFTS

Query:  AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV
        AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV
Subjt:  AHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGGGAAGGACCTTTGGCTTCATGTCCTCCTGTTCTCGATGGTAAACATTATTCGTACTGGAAAGCTCATATAAATTTAGTTATCAAAACCTTAGATGG
TAGAGTGTGGAGAGCTCTTGTGGCTGGATATGAACCACCTATGATCACTATAGATTGGGTGTCTATTCCAAAATCTGAAGCAGACTGGACGGATACTGAAGAACAAGCCT
TGATTGGTAATGCAAGAGCTTTCAATACTATATTCAATGATGTTGATCCGAATGTATTTAAACTGAAAAATTCTTGTAGTTTTGCCAGAGAGGCCTGGAAAATATTGGAA
GTCACTTACGAAGGCACTACTAAAGTTAAAAAATCCAGATTACAGTTGATTACCTCAAAGTTTGAAGTTTTAAAAATGTCGGAGGATGAGTCTGTATCTAAATATAATGG
GAGAGTTTTGGAAATAGCCAATGAGTCATTACTTCTTGGAGGAAAGATTCCTGAATCTAAGATAGTGCGAAGAACCAGAGTGGTTATGAAAACTATCAATGTGGTTGTGA
ATGATTCTGAGCAGACATACAAACAAACAGATGATGATGATGAACTAGCACCTAAAGTTACAATTGTCCCTGAAGTAACTGTTGCCGATGCTCTTGTAGCTGATACAATT
GATGAACCTTTCACTTCAGCTCATTCGGACGAAAGGTCATCTTCTGAAGACATTTTTGTTCCAACCCCTGGTCATCCTTCTATTACAAATAAAGTTGGTCAATCTGAACG
CTTCCCACCAGTTAAGTCTTTAGTTCGGGTCGATTCATCAGTTGATGATCAATGTTCAGTTTCTGACCTTGACCTTGTAGGTGATTCTACTGTTAATTTGGGTGGAAATA
TTGTTATTTATGCTAATGAGAATCTTACTAAACATGTTGATGCTCATGATAAACCTACTGAAAATTATGCACCCGATAATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGGGAAGGACCTTTGGCTTCATGTCCTCCTGTTCTCGATGGTAAACATTATTCGTACTGGAAAGCTCATATAAATTTAGTTATCAAAACCTTAGATGG
TAGAGTGTGGAGAGCTCTTGTGGCTGGATATGAACCACCTATGATCACTATAGATTGGGTGTCTATTCCAAAATCTGAAGCAGACTGGACGGATACTGAAGAACAAGCCT
TGATTGGTAATGCAAGAGCTTTCAATACTATATTCAATGATGTTGATCCGAATGTATTTAAACTGAAAAATTCTTGTAGTTTTGCCAGAGAGGCCTGGAAAATATTGGAA
GTCACTTACGAAGGCACTACTAAAGTTAAAAAATCCAGATTACAGTTGATTACCTCAAAGTTTGAAGTTTTAAAAATGTCGGAGGATGAGTCTGTATCTAAATATAATGG
GAGAGTTTTGGAAATAGCCAATGAGTCATTACTTCTTGGAGGAAAGATTCCTGAATCTAAGATAGTGCGAAGAACCAGAGTGGTTATGAAAACTATCAATGTGGTTGTGA
ATGATTCTGAGCAGACATACAAACAAACAGATGATGATGATGAACTAGCACCTAAAGTTACAATTGTCCCTGAAGTAACTGTTGCCGATGCTCTTGTAGCTGATACAATT
GATGAACCTTTCACTTCAGCTCATTCGGACGAAAGGTCATCTTCTGAAGACATTTTTGTTCCAACCCCTGGTCATCCTTCTATTACAAATAAAGTTGGTCAATCTGAACG
CTTCCCACCAGTTAAGTCTTTAGTTCGGGTCGATTCATCAGTTGATGATCAATGTTCAGTTTCTGACCTTGACCTTGTAGGTGATTCTACTGTTAATTTGGGTGGAAATA
TTGTTATTTATGCTAATGAGAATCTTACTAAACATGTTGATGCTCATGATAAACCTACTGAAAATTATGCACCCGATAATGTTTAA
Protein sequenceShow/hide protein sequence
MEIIREGPLASCPPVLDGKHYSYWKAHINLVIKTLDGRVWRALVAGYEPPMITIDWVSIPKSEADWTDTEEQALIGNARAFNTIFNDVDPNVFKLKNSCSFAREAWKILE
VTYEGTTKVKKSRLQLITSKFEVLKMSEDESVSKYNGRVLEIANESLLLGGKIPESKIVRRTRVVMKTINVVVNDSEQTYKQTDDDDELAPKVTIVPEVTVADALVADTI
DEPFTSAHSDERSSSEDIFVPTPGHPSITNKVGQSERFPPVKSLVRVDSSVDDQCSVSDLDLVGDSTVNLGGNIVIYANENLTKHVDAHDKPTENYAPDNV