CuGenDBv2

Gene ID	IVF0007666
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Small nuclear ribonucleoprotein E
Genome location	chr02:18570293..18574904
RNA-Seq Expression	IVF0007666
Synteny	IVF0007666
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027078 - Small nuclear ribonucleoprotein E

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146294.1 small nuclear ribonucleoprotein E [Cucumis sativus]

8.28e-54

98.86

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

XP_008453647.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo]

2.89e-54

100

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

XP_017978111.1 PREDICTED: small nuclear ribonucleoprotein E [Theobroma cacao]

3.38e-53

96.59

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKS+K+LGRILLKGDNITLMMNAGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

XP_022921760.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata]

1.18e-53

98.86

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

XP_022932078.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata]

3.38e-53

97.73

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LUF2 Small nuclear ribonucleoprotein E

3.7e-39

98.86

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

A0A1S3BXJ8 Small nuclear ribonucleoprotein E

1.7e-39

100

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

A0A6J1E6Q3 Small nuclear ribonucleoprotein E

4.9e-39

98.86

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

A0A6J1ICX7 Small nuclear ribonucleoprotein E

1.1e-38

97.73

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

A0A6J1JLU4 Small nuclear ribonucleoprotein E

4.9e-39

98.86

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

SwissProt top hits

e value

%identity

Alignment

A1XQR9 Small nuclear ribonucleoprotein E

4.9e-28

71.6

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Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E

4.9e-28

71.6

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Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E

4.9e-28

71.6

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Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E

4.9e-28

71.6

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Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E

4.9e-28

71.6

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Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

Arabidopsis top hits

e value

%identity

Alignment

AT2G18740.1 Small nuclear ribonucleoprotein family protein

3.7e-39

89.77

Show/hide

Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

AT2G18740.2 Small nuclear ribonucleoprotein family protein

5.3e-30

88.73

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

AT4G30330.1 Small nuclear ribonucleoprotein family protein

3.3e-40

92.05

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Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LGRILLKGDNITLMMNAGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

AT5G48870.1 Small nuclear ribonucleoprotein family protein

9.2e-06

35.06

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Query:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--LGRILLKGDNITLMMNAG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L +ILL G+NI +++  G
Subjt:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--LGRILLKGDNITLMMNAG

Sequences

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CDS sequence

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ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
TAGGATTGAAGGCCGAATTATCGGATTTGATGAGTACATGAACTTAGTGCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTC
TTCTCAAGGGAGACAATATTACATTAATGATGAACGCGGGAAAATGA

mRNA sequence

Show/hide mRNA sequence

GAGAGATAAAAATGTGCCGCGAGGGGTCTTTACAATTTAAATAAAACTGGGTTAGGGTTTCGTTTCTCATATCCCCGAAGATCCTCTTTACATTTTCGATAGCCATGGCG
AGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGAT
TGAAGGCCGAATTATCGGATTTGATGAGTACATGAACTTAGTGCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCA
AGGGAGACAATATTACATTAATGATGAACGCGGGAAAATGATGATCATCCAGCAGAACACATTATTGAGATAAAGTTTTCACTTTCATTGTAACATTCTGGCGGTGAAGC
CTTTACAATTACCTTCTGTTGTGAGGTTGTTTCTTTCAACGTTTTAAGTCATCGCTGATTAGCTAGTTCTTTGGATGTCTAGTGTAATGTTATATTGCTGTTGGTAGGTT
ATCCATATATGTGAACACCTTTTAGTTTATCATTGTTATAATTGGTTGTTTACACCAACCAATCCTTGAAACTATGAATTTGGTTCTTTGAATCATAAACTATAAATAGT
GGAGCACCTTTGAGAACGTTCGGTTTATTTTGAGAGGGATGGTGGTTGCCCTGAATTCTGATTGTCTTCACTCTCGGAGAAATAAGTGTCACCCTTCTTATCCTGTAGAA
GATTGATTACCAACTTATGTTGTGACGATCTGTTCTAAATATTACTTTTTAGAGTATTTTGTTGCAATTTTAAAGAAAAACTTACGTGCGGACATCTTTGCTTAAGGCAA
CTGTTCTGGGTATATATCCATAGACTTAATATTGGGCCAAGCTCTCCAGCAGTAGTATGAGTATCTAAGTTCAAGCCATTATCCAGGAAGGATAGAAAACCACTTAACAA
GAGGCCCATAGGCAGTGTTGGGTGTGGGGTACTAAATCATTCCCTTTATGATCAAATATATGTATATGAGCAATAAATCTAATACAGTGCTGGTTCTGCCTTTGTCGTTT
TTACATGATGTAGGCAATCATGAAGTTGGAAAGGGGAAGGTGAAGCAGATAAAAGGTAGACATCCATTAGTAGACTTCTGGTGATAAAAGGCATATCTGAGCACCAGGGT
GTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACGTGGGGTCAGGGAATCACACCCTTCTAGCTCGTTTAACCATTGTCT
TGATGTCTTCTGCTTGCAATTGGCAGTATGAGAAAAGGCATGTCTACCCTTGAGTTGGAAAACGAGTGCGCCATCGCATTTGTTCTTCTTTTGCATTTATTGGTTACTGA
CTCATCTTCCACACTTATCATTTCTCTTCCTCTCTCCTCCTTGGGTGCAAATAAGCCACTCCATTCCATTTGGTGCTTTCTTTGACACATTCCATAACCCTGATTTCCTT
CTCATGATTGGAGAAATGCATGATTGTTTCACAGTGCTTGACACAACATGAAAACATCACTATTCTTTTATTTTACTTTCTTATCAATT

Protein sequence

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MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK

IVF0007666 (gene) of Melon (IVF77) v1 genome