; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0007699 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007699
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr03:4121918..4122436
RNA-Seq ExpressionIVF0007699
SyntenyIVF0007699
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]2.34e-9984.3Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYE MK EF DEDVM VSDT QDTEIWTMFFDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
         DGKSYPLT KLYFDCT+NMAEYE CSMGV+MAYD+KIKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

KAA0056621.1 uncharacterized protein E6C27_scaffold288G001400 [Cucumis melo var. makuwa]4.62e-7560.47Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVL SE+DI+YVT+  +KGSA+ + LA  PV DYE M+ +F DE++  V    +D E WTM FDGA+NE+GHG+G +L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+ K +PL AKL F+CT+N+AEYE C MG+++A+D+ IKKL+V  DS+LV+HQ+  EWETRD+KL+PY++Y+
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

TYK07551.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]2.93e-7361.05Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVL SEYDI+YVT+  +KGSA+ D LA  PV DYE M+ +F +E++  V    +D E WTM FDGA+NE+GH +G +L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+GK +PLTAKL F+CT N+AEYE C M +++A D+ IKKL+V  D  LVIHQ+  EWETRD+KL+PY++Y+
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_008447313.1 PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]1.79e-8067.44Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLS +IAKW VL  E+DI+Y+TR  +KGS I DCL +LP+EDYE MKF+FLDED+MT+ +T  DT  WTM FD ATN+VGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        PD K YP T KLYFDCTNNM EY+ CSMGV++AY++KIK L+V  DSLLV+H+LN E+ETRD+K IPYN YI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]6.38e-125100Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

TrEMBL top hitse value%identityAlignment
A0A1S3BH42 uncharacterized protein LOC1034897843.8e-6467.44Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLS +IAKW VL  E+DI+Y+TR  +KGS I DCL +LP+EDYE MKF+FLDED+MT+ +T  DT  WTM FD ATN+VGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        PD K YP T KLYFDCTNNM EY+ CSMGV++AY++KIK L+V  DSLLV+H+LN E+ETRD+K IPYN YI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A1S4DTT9 uncharacterized protein LOC1079905056.5e-96100Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A5A7U7X5 Ribonuclease H5.6e-6373.25Show/hide
Query:  RIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD
        RIAKWQVL SE+DI+Y+TR  +KGS I DCLA+LP+EDYE MKF+F DED+M + +T  +T  WTM FDGATNE+GHGVG IL  PDGK YPLTAKLYFD
Subjt:  RIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD

Query:  CTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        CTNNMAEYE CSMGV+MAY++KIKKL+V  DS+LV+HQLN EWETRD+KLIPYN YI
Subjt:  CTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.66.5e-96100Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A5D3BPI8 RNase H domain-containing protein1.4e-7784.3Show/hide
Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYE MK EF DEDVM VSDT QDTEIWTMFFDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTF

Query:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
         DGKSYPLT KLYFDCT+NMAEYE CSMGV+MAYD+KIKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  PDGKSYPLTAKLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGCCATCCTTGTCTGGACGAATAGCTAAATGGCAGGTGTTGCCATCCGAGTATGATATCATCTATGTTACAAGAAATGTCGT
GAAAGGAAGTGCAATTACCGATTGTTTAGCTGATTTGCCAGTCGAAGACTATGAACTAATGAAATTTGAATTTCTAGATGAGGACGTCATGACAGTATCAGATACACCTC
AAGATACAGAAATATGGACAATGTTCTTTGATGGAGCCACAAATGAGGTAGGACATGGTGTGGGGGCTATTCTAACATTTCCTGATGGAAAATCGTATCCTCTAACTGCT
AAGTTGTACTTTGATTGCACAAATAACATGGCTGAATATGAAACATGTAGTATGGGAGTTAAAATGGCCTATGACTTGAAGATTAAGAAGTTGCAAGTTTATGAAGATTC
TCTCTTAGTAATACATCAGCTCAATAGGGAATGGGAGACGAGAGACTCTAAATTGATTCCCTACAACAAGTATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGCCATCCTTGTCTGGACGAATAGCTAAATGGCAGGTGTTGCCATCCGAGTATGATATCATCTATGTTACAAGAAATGTCGT
GAAAGGAAGTGCAATTACCGATTGTTTAGCTGATTTGCCAGTCGAAGACTATGAACTAATGAAATTTGAATTTCTAGATGAGGACGTCATGACAGTATCAGATACACCTC
AAGATACAGAAATATGGACAATGTTCTTTGATGGAGCCACAAATGAGGTAGGACATGGTGTGGGGGCTATTCTAACATTTCCTGATGGAAAATCGTATCCTCTAACTGCT
AAGTTGTACTTTGATTGCACAAATAACATGGCTGAATATGAAACATGTAGTATGGGAGTTAAAATGGCCTATGACTTGAAGATTAAGAAGTTGCAAGTTTATGAAGATTC
TCTCTTAGTAATACATCAGCTCAATAGGGAATGGGAGACGAGAGACTCTAAATTGATTCCCTACAACAAGTATATTTGA
Protein sequenceShow/hide protein sequence
MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFEFLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTA
KLYFDCTNNMAEYETCSMGVKMAYDLKIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI