| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0048391.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] | 2.42e-76 | 84.71 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| XP_004149725.1 RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] | 2.49e-70 | 78.34 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RL EI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
A ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| XP_008461821.1 PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo] | 6.44e-76 | 84.71 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| XP_022152696.1 RNA polymerase sigma factor sigD, chloroplastic [Momordica charantia] | 2.80e-66 | 72.61 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAE NNHLGIKLSR PT++E+AESL VRVSTV+L EI+PGPDNLTPENMVMRKLMKQEL+RLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHI+ LYFGLNGEIPQSFEEIGKS+NLSRET+RR+NIA LSKLKKT++LDY+KDY+V
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| XP_038906215.1 RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida] | 5.59e-69 | 75.8 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAE NNHLG+KLSRPPT++EVAESLKVRVSTVRL EI+PGPDNLTPENMVMRKLMKQE+KRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+IN+ATLSKLK T++LDY+K+YLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0L9T0 Uncharacterized protein | 8.7e-56 | 78.34 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RL EI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
A ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| A0A1S3CFL7 RNA polymerase sigma factor sigD, chloroplastic | 2.0e-60 | 84.71 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| A0A5D3BP27 RNA polymerase sigma factor sigD | 2.0e-60 | 84.71 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| A0A6J1DII5 RNA polymerase sigma factor sigD, chloroplastic | 1.2e-52 | 72.61 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAE NNHLGIKLSR PT++E+AESL VRVSTV+L EI+PGPDNLTPENMVMRKLMKQEL+RLLNTLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHI+ LYFGLNGEIPQSFEEIGKS+NLSRET+RR+NIA LSKLKKT++LDY+KDY+V
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| A0A6J1J3P0 RNA polymerase sigma factor sigD, chloroplastic | 2.2e-51 | 73.25 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
MGQMVARIAE NNHLGIKLSR PT++EVA+ LKV VSTVRL EI+PGPDNLTPENMV+RKLMKQELKRLL+TLSKRE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
AHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ NIATL+KLKK+N+LDY+KDYLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P26683 RNA polymerase sigma factor SigA | 1.6e-11 | 29.41 | Show/hide |
Query: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
+ ++RI + L ++ R PT EE+A +++ + +R LE G D TPE+ V + L++++L+++L++LS RE +
Subjt: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
Query: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
L L +GL+ ++ EEIG+ N++RE IR+I L KL+ N +K+Y+
Subjt: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
|
|
| P38023 RNA polymerase sigma factor SigA1 | 2.8e-11 | 30.07 | Show/hide |
Query: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
+ ++RI + L ++ R PT EE+A +++ + +R LE G D TPE+ V + L++++L+ +L+TLS RE +
Subjt: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
Query: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
L L +GL+ ++ EEIG+ N++RE IR+I L KL+ N +K+Y+
Subjt: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
|
|
| P52322 RNA polymerase sigma factor SigA | 1.6e-11 | 30.07 | Show/hide |
Query: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
+ ++RI + L ++ R PT EE+A +++ + +R LE G D TPE+ V + L++++L+ +L+TLS RE +
Subjt: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
Query: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
L L +GL+ ++ EEIG+ N++RE IR+I L KL+ N +K+Y+
Subjt: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
|
|
| P74565 RNA polymerase sigma factor SigA | 3.3e-12 | 30.72 | Show/hide |
Query: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
+ ++RI + L ++ R PT EE+AE +++ + +R LE G D TPE+ V + L++++L+ +L+TLS RE +
Subjt: QMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVR-----------LEIIPG------------PDNLTPENMVMRKLMKQELKRLLNTLSKREAHI
Query: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
L L +GL+ ++ EEIG+ N++RE IR+I L KL+ N +K+Y+
Subjt: LSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
|
|
| Q9ZSL6 RNA polymerase sigma factor sigD, chloroplastic | 5.3e-26 | 44.52 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
M ++ A++AE +N L KL R P+ EE+AE L + VS VRL EI+ GPD PE MV R+ MK E+++LL +L+ RE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDY
+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN L KL+ + ++ +K Y
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDY
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.4e-10 | 26.11 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV---RVSTVRL---------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
M + R+ E L + + P NEE+AE+ + R+ V L E+I P+ +T E++++++ M+Q+L ++L++L RE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV---RVSTVRL---------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
++ FG+ ++ +EIG+ + +SRE +R+I + KLK ++++ YLV
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
| AT2G36990.1 RNApolymerase sigma-subunit F | 5.1e-08 | 37.5 | Show/hide |
Query: EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKK
EI P TP V ++LM+ ++ LLN LS +E I+ L FG++G +S EIG+ LS+E +R++ L +LK+
Subjt: EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKK
|
|
| AT3G53920.1 RNApolymerase sigma-subunit C | 1.3e-08 | 35.42 | Show/hide |
Query: STVRLEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
+T LE P +PE VMR+ ++++ LL L RE ++ L +GL P+S EEIGK L +S+E IR+I ++KL+ + ++ YL
Subjt: STVRLEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYL
|
|
| AT5G13730.1 sigma factor 4 | 3.8e-27 | 44.52 | Show/hide |
Query: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
M ++ A++AE +N L KL R P+ EE+AE L + VS VRL EI+ GPD PE MV R+ MK E+++LL +L+ RE
Subjt: MGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRL------------------------EIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKRE
Query: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDY
+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN L KL+ + ++ +K Y
Subjt: AHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDY
|
|
| AT5G24120.1 sigma factor E | 4.6e-09 | 27.52 | Show/hide |
Query: IAEENNHLGIKLSRPPTNEEVAESLKV--------------------RVSTVRLEIIPG---PDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYF
I + L ++ RPPT +EV E LK+ + S + E I G D + N L++ L +L++L +E+ ++ +
Subjt: IAEENNHLGIKLSRPPTNEEVAESLKV--------------------RVSTVRLEIIPG---PDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYF
Query: GLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
GL+G+ ++ EI +LN+SRE +R+ + L KLK +DY++ Y+V
Subjt: GLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV
|
|
