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IVF0007770 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007770
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:21979335..21979576
RNA-Seq ExpressionIVF0007770
SyntenyIVF0007770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051827.1 retrotransposon protein [Cucumis melo var. makuwa]6.29e-0772.22Show/hide
Query:  TTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        TTMNN   LL G+SYN+KTQA+H +RSSDS RPSLS
Subjt:  TTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

KAA0065970.1 retrotransposon protein [Cucumis melo var. makuwa]1.55e-0852.24Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        MS +E+MGTRT   SEGR V S SK+K GG   +++   + T + Y +KTQA+HV+R  DS RPSLS
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

KAA0066105.1 retrotransposon protein [Cucumis melo var. makuwa]4.38e-1052.56Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHT-------------TMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPS
        MS DEVMGT+T   S+GRNVSSESKRK GG +              +NN   LLT  SYN KTQA+  +RS DS R S
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHT-------------TMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPS

KAA0066918.1 retrotransposon protein [Cucumis melo var. makuwa]4.38e-0541.43Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRK--------------HGGHTTMNNPPTLLTGMSYNIKTQARHVR
        MS DE+MGTRT W SE  + + +   K              H     MNN   LL G+SY++KTQA+HVR
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRK--------------HGGHTTMNNPPTLLTGMSYNIKTQARHVR

TYK30259.1 retrotransposon protein [Cucumis melo var. makuwa]3.89e-0852.24Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        MS +E+MGTRT   SEGR V S SK+K GG   +++   + T + Y +KTQA+HV+R  DS RPSLS
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

TrEMBL top hitse value%identityAlignment
A0A5A7VFI4 Retrotransposon protein6.0e-0552.24Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        MS +E+MGTRT   SEGR V S SK+K GG   +++   + T + Y +KTQA+HV+R  DS RPSLS
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

A0A5D3CW35 Retrotransposon protein1.6e-0552.56Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHT-------------TMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPS
        MS DEVMGT+T   S+GRNVSSESKRK GG +              +NN   LLT  SYN KTQA+  +RS DS R S
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHT-------------TMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPS

A0A5D3DCN7 Retrotransposon protein3.9e-0472.22Show/hide
Query:  TTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        TTMNN   LL G+SYN+KTQA+H +RSSDS RPSLS
Subjt:  TTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

A0A5D3E392 Retrotransposon protein6.0e-0552.24Show/hide
Query:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS
        MS +E+MGTRT   SEGR V S SK+K GG   +++   + T + Y +KTQA+HV+R  DS RPSLS
Subjt:  MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCGTGATGAAGTAATGGGAACAAGAACCACCTGGGAAAGTGAGGGTAGGAACGTTTCGAGCGAGTCTAAGCGAAAACATGGAGGACATACGACAATGAACAACCC
ACCCACATTGCTGACTGGCATGTCCTACAACATCAAGACGCAAGCACGACACGTCAGGAGGTCATCTGATAGTTGCAGGCCATCCCTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCGTGATGAAGTAATGGGAACAAGAACCACCTGGGAAAGTGAGGGTAGGAACGTTTCGAGCGAGTCTAAGCGAAAACATGGAGGACATACGACAATGAACAACCC
ACCCACATTGCTGACTGGCATGTCCTACAACATCAAGACGCAAGCACGACACGTCAGGAGGTCATCTGATAGTTGCAGGCCATCCCTGAGCTGA
Protein sequenceShow/hide protein sequence
MSRDEVMGTRTTWESEGRNVSSESKRKHGGHTTMNNPPTLLTGMSYNIKTQARHVRRSSDSCRPSLS