CuGenDBv2

Gene ID	IVF0007771
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr05:6943049..6943660
RNA-Seq Expression	IVF0007771
Synteny	IVF0007771
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032014.1 uncharacterized protein E6C27_scaffold134G001120 [Cucumis melo var. makuwa]

9.78e-147

100

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TFT
        TFT
Subjt:  TFT

KAA0043019.1 uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa]

4.74e-123

89.16

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        +VGSASTNFS+VITIGERIEFGVKNGRISDPAS+TRRMMTPKK EGEV ELSSTQRVATRVSS +VGQ NFS GYQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP++LKS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHS EN FPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPL NHEGP INA+ 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TFT
        TFT
Subjt:  TFT

KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]

6.84e-123

90.1

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VI IGERIEFGVKNGRISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP+INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]

4.39e-119

90.1

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VITIGERIEFGVKN RISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP+INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]

1.87e-117

90.59

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VITIGERIEFGVKNGRISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLF7 Uncharacterized protein

2.4e-113

100

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TFT
        TFT
Subjt:  TFT

A0A5A7SUT0 Reverse transcriptase

2.1e-101

90.59

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VITIGERIEFGVKNGRISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP ++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP+INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

A0A5A7TUT4 Uncharacterized protein

6.1e-101

90.1

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VI IGERIEFGVKNGRISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP+INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

A0A5A7V681 Retrotrans_gag domain-containing protein

1.0e-100

90.1

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Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VITIGERIEFGVKN RISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP+INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

A0A5A7VAU5 Uncharacterized protein

2.1e-101

90.59

Show/hide

Query:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF
        MVGSASTNFS+VITIGERIEFGVKNGRISDPAS+TRR+MTPKKKEGEVHELSSTQRVATRVSS IVGQ NFS  YQNGGQSPFG STQRNIRNNWKQTRF
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRF

Query:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY
        DPIPMSYT+LLP+++KS+QVAIV QEPLQPPYPKWYDPN KCEYHAGAVGHSTENCFPLKAKVQSLVKAGWL+FKKTGEEPDVNQNPL NHEGP INAV 
Subjt:  DPIPMSYTDLLPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVY

Query:  TF
        TF
Subjt:  TF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTGGAAGTGCTTCAACTAATTTCTCGAACGTCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGAATCTCTGATCCCGCTTCAAAGACAAGAAG
AATGATGACCCCAAAGAAAAAAGAAGGAGAAGTACACGAGTTGAGTTCGACTCAAAGAGTAGCAACACGTGTATCCTCACTAATTGTGGGGCAGAAAAATTTCTCTTCTG
GTTATCAGAATGGAGGACAAAGCCCATTTGGTCATTCAACTCAAAGAAACATAAGGAACAATTGGAAGCAAACCCGTTTTGATCCTATACCTATGTCGTACACAGATCTT
TTGCCTAAAATTTTAAAGAGTTATCAAGTGGCTATTGTATCACAAGAGCCTCTGCAACCACCATATCCTAAGTGGTATGACCCCAACACAAAATGTGAATATCATGCTGG
GGCAGTTGGGCATTCTACGGAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAGAGTCTAGTTAAAGCTGGTTGGTTGAAATTCAAGAAGACAGGGGAAGAGCCTGATGTCA
ACCAGAACCCTTTACTAAATCATGAGGGTCCCACCATAAATGCGGTTTACACGTTTACGTAA

mRNA sequence

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Protein sequence

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MVGSASTNFSNVITIGERIEFGVKNGRISDPASKTRRMMTPKKKEGEVHELSSTQRVATRVSSLIVGQKNFSSGYQNGGQSPFGHSTQRNIRNNWKQTRFDPIPMSYTDL
LPKILKSYQVAIVSQEPLQPPYPKWYDPNTKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLKFKKTGEEPDVNQNPLLNHEGPTINAVYTFT

IVF0007771 (gene) of Melon (IVF77) v1 genome