CuGenDBv2

Gene ID	IVF0007791
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase ATRX
Genome location	chr05:15242689..15242986
RNA-Seq Expression	IVF0007791
Synteny	IVF0007791
Gene Ontology terms	GO:0000781 - chromosome, telomeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040430.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucumis melo var. makuwa]

6.87e-32

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA

XP_008441785.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis melo]

2.79e-14

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

XP_011649017.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus]

2.79e-14

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

XP_011649018.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]

2.79e-14

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

XP_031736981.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]

2.79e-14

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKL8 Uncharacterized protein

2.0e-24

97.01

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLARTID
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDIS FICIY VLALLVASCLARTID
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLARTID

A0A1S3B484 ATP-dependent helicase ATRX

1.5e-11

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

A0A1S3B4W2 ATP-dependent helicase ATRX

1.5e-11

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

A0A1S3B4Z9 ATP-dependent helicase ATRX

1.5e-11

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLE

A0A5D3BJY9 Protein CHROMATIN REMODELING 20 isoform X3

2.9e-23

100

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Query:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA
        MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA
Subjt:  MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAGAAGCACGAGGACGTGGATGATGTTGGAAGCGCGTCCGGTGATTCTTTTATCGATGATTCTGAAGACGATGGGCCATCAACTTCTGGGAAGGACGATCAGTT
GCATCTCGAGGCAAGCGACATTAGCTTCTTCATTTGTATTTACCTAGTCTTGGCTTTACTTGTTGCTTCATGTCTTGCTAGAACCATTGACTGA

mRNA sequence

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Protein sequence

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MEEKHEDVDDVGSASGDSFIDDSEDDGPSTSGKDDQLHLEASDISFFICIYLVLALLVASCLARTID

IVF0007791 (gene) of Melon (IVF77) v1 genome