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IVF0007821 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007821
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr03:14245569..14246371
RNA-Seq ExpressionIVF0007821
SyntenyIVF0007821
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]1.45e-4155.36Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------
        MEEFRPISCCNVIY+ ISKILADR+CVWLPSFIS N+SAF+  RSIIDNIL                                                 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------

Query:  ----LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
            LFANL KSSIFV  VS+E ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITS I
Subjt:  ----LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.67e-3044.22Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------LFANLEKSS--------------------I
        MEEFRPISCCNVIY+ ISKILADRL VWLPSFI  N+SAFI  RSIIDNIL                   L  +L+K+                     +
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------LFANLEKSS--------------------I

Query:  FVV---------------------------------------------RVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
        FV+                                              +SNE ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITSRI
Subjt:  FVV---------------------------------------------RVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]2.28e-2940.48Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------
        +E+FRPISCCNV+Y+ ISKILADRL VWLPSFIS N+SAFI  RSII+NIL                                                 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------

Query:  ----------------------------------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYA
                                                      LFAN  KSSIF+  V+NE AS L A +G   GNLPVR LGLPLL GRLR ND  
Subjt:  ----------------------------------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYA

Query:  PLIQRITSRI
        PLIQRITSRI
Subjt:  PLIQRITSRI

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]8.21e-3955.49Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC----------------------------------LFANL---------
        MEEFRPISCCNVIY+ ISKILADR+CVWLPSFIS N+SAF+  RSIIDNIL                                   LF  L         
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC----------------------------------LFANL---------

Query:  -----EKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
              KSSIFV  VS+E ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITS I
Subjt:  -----EKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]7.16e-2942.25Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------
        +E+F PISCC+VIY+ IS+ILADRL VWLPSF+SGN+ AFI  RSIIDNIL                                                 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------

Query:  -----------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
                               LFANL KS IF+V V++  AS L A++G ++G+LPVR LGLPLL  RLR +D  PLIQRITSRI
Subjt:  -----------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932251.2e-2440.48Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------
        +E+FRPISCCNV+Y+ ISKILADRL VWLPSFIS N+SAFI  RSII+NIL                                                 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------

Query:  ----------------------------------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYA
                                                      LFAN  KSSIF+  V+NE AS L A +G   GNLPVR LGLPLL GRLR ND  
Subjt:  ----------------------------------------------LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYA

Query:  PLIQRITSRI
        PLIQRITSRI
Subjt:  PLIQRITSRI

A0A1S4E258 uncharacterized protein LOC1034968802.6e-3255.49Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC----------------------------------LFANL---------
        MEEFRPISCCNVIY+ ISKILADR+CVWLPSFIS N+SAF+  RSIIDNIL                                   LF  L         
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC----------------------------------LFANL---------

Query:  -----EKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
              KSSIFV  VS+E ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITS I
Subjt:  -----EKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

A0A5A7V4C1 Reverse transcriptase domain-containing protein1.3e-3455.36Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------
        MEEFRPISCCNVIY+ ISKILADR+CVWLPSFIS N+SAF+  RSIIDNIL                                                 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC------------------------------------------------

Query:  ----LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
            LFANL KSSIFV  VS+E ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITS I
Subjt:  ----LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.8e-2544.22Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL------------------CLFANLEKS--------------------SI
        MEEFRPISCCNVIY+ ISKILADRL VWLPSFI  N+SAFI  RSIIDNIL                   L  +L+K+                     +
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL------------------CLFANLEKS--------------------SI

Query:  FVV---------------------------------------------RVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
        FV+                                              +SNE ASHL AS+G  LGNLPVR LGLPLL GRLR ND APLIQRITSRI
Subjt:  FVV---------------------------------------------RVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

A0A5D3DSA8 Putative non-LTR retroelement reverse transcriptase6.5e-2344.07Show/hide
Query:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL---------------------------------------CLFANLEKSS
        ME+FRPISCCNV+Y+ ISKILADRL VWLPSFIS N+SAFI  RSII+NIL                                       C+   + +S 
Subjt:  MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL---------------------------------------CLFANLEKSS

Query:  IFVVRVSNEVASHL-------------DASL---------GIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
        +F  R      +HL             ++SL          + LGNLPVR LGLPLL GRLR +D APLIQRITSRI
Subjt:  IFVVRVSNEVASHL-------------DASL---------GIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.6e-0451.28Show/hide
Query:  SLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI
        S   A G LPVR LGLPLL  ++  +DY PL+++I  RI
Subjt:  SLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGTTTCGACCTATTTCTTGTTGTAATGTGATATACCAATCTATTTCTAAGATTTTGGCTGATAGACTTTGTGTGTGGCTTCCTTCTTTTATTAGTGGTAATAA
GTCTGCTTTTATTCATGAAAGGAGTATTATTGATAATATTCTTTGTTTGTTTGCAAATCTTGAGAAAAGCTCTATTTTTGTTGTGCGGGTTAGTAACGAGGTTGCTTCCC
ATTTAGATGCTAGTTTGGGTATTGCCCTTGGGAACCTACCTGTTCGCAATCTTGGACTTCCTTTACTATTTGGTAGGTTACGTCTTAATGATTATGCTCCTCTTATTCAA
CGTATTACTAGTCGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGTTTCGACCTATTTCTTGTTGTAATGTGATATACCAATCTATTTCTAAGATTTTGGCTGATAGACTTTGTGTGTGGCTTCCTTCTTTTATTAGTGGTAATAA
GTCTGCTTTTATTCATGAAAGGAGTATTATTGATAATATTCTTTGTTTGTTTGCAAATCTTGAGAAAAGCTCTATTTTTGTTGTGCGGGTTAGTAACGAGGTTGCTTCCC
ATTTAGATGCTAGTTTGGGTATTGCCCTTGGGAACCTACCTGTTCGCAATCTTGGACTTCCTTTACTATTTGGTAGGTTACGTCTTAATGATTATGCTCCTCTTATTCAA
CGTATTACTAGTCGGATTTGA
Protein sequenceShow/hide protein sequence
MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQ
RITSRI