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IVF0007842 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007842
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:5705556..5705855
RNA-Seq ExpressionIVF0007842
SyntenyIVF0007842
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040517.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.41e-2867.03Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG
        +ED GA TS D++RS+GE +EE+ A AC SSWR+EE  R L RS RST D  WL STD GD GCW TKKEKS+EVVAVGEARRR+R WG G
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG

KAA0051832.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.96e-63100Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL
        MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL

TYK23446.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.41e-2867.03Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG
        +ED GA TS D++RS+GE +EE+ A AC SSWR+EE  R L RS RST D  WL STD GD GCW TKKEKS+EVVAVGEARRR+R WG G
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG

TrEMBL top hitse value%identityAlignment
A0A5A7TG30 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-2367.03Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG
        +ED GA TS D++RS+GE +EE+ A AC SSWR+EE  R L RS RST D  WL STD GD GCW TKKEKS+EVVAVGEARRR+R WG G
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG

A0A5A7U7U5 NBS-LRR type resistance protein1.1e-47100Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL
        MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL

A0A5D3DIH5 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-2367.03Show/hide
Query:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG
        +ED GA TS D++RS+GE +EE+ A AC SSWR+EE  R L RS RST D  WL STD GD GCW TKKEKS+EVVAVGEARRR+R WG G
Subjt:  MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATCACGGAGCTGCGACGAGCGGAGATGACAAACGTTCGCAAGGGGAGGTAGACGAAGAGGAAACCGCGACAGCGTGCGGCTCGTCATGGAGGGACGAAGAACG
CCGGCGATTCCTACGGAGGAGCGAGCGTTCGACTACGGATGTTGCGTGGTTGGCATCGACTGATGGCGGGGATAGAGGCTGCTGGTCGACGAAGAAGGAGAAGAGCATGG
AGGTAGTGGCAGTTGGGGAAGCACGAAGAAGAAAAAGACGGTGGGGAGAGGGGCGGCTGCTTCATGAGAAAATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATCACGGAGCTGCGACGAGCGGAGATGACAAACGTTCGCAAGGGGAGGTAGACGAAGAGGAAACCGCGACAGCGTGCGGCTCGTCATGGAGGGACGAAGAACG
CCGGCGATTCCTACGGAGGAGCGAGCGTTCGACTACGGATGTTGCGTGGTTGGCATCGACTGATGGCGGGGATAGAGGCTGCTGGTCGACGAAGAAGGAGAAGAGCATGG
AGGTAGTGGCAGTTGGGGAAGCACGAAGAAGAAAAAGACGGTGGGGAGAGGGGCGGCTGCTTCATGAGAAAATTTTGTAA
Protein sequenceShow/hide protein sequence
MEDHGAATSGDDKRSQGEVDEEETATACGSSWRDEERRRFLRRSERSTTDVAWLASTDGGDRGCWSTKKEKSMEVVAVGEARRRKRRWGEGRLLHEKIL