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IVF0007852 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0007852
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein RADIALIS-like 3
Genome locationchr04:4987479..4988643
RNA-Seq ExpressionIVF0007852
SyntenyIVF0007852
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.43e-5996.81Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]4.70e-59100Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]1.01e-5385.26Show/hide
Query:  MGSG-SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSG SNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Subjt:  MGSG-SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]8.32e-5081.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]3.51e-6093.62Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQRMRSL+L+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.9e-4496.81Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

A0A1S3CPA0 protein RADIALIS-like 37.0e-44100Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

A0A5D3D7Z0 Protein RADIALIS-like 37.0e-44100Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

A0A6J1CC55 protein RADIALIS-like 32.8e-4085.26Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

A0A6J1FM85 protein RADIALIS-like 34.9e-3781.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.5e-2762.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q1A173 Protein RADIALIS-like 64.6e-2458.43Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q58FS3 Transcription factor RADIALIS5.4e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G   +       E+R R+L++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q6NNN0 Protein RADIALIS-like 37.0e-2567.12Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q9SIJ5 Protein RADIALIS-like 26.4e-2659.78Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.8e-2365.71Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 69.4e-2572.73Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 63.2e-2558.43Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

AT2G21650.1 Homeodomain-like superfamily protein4.5e-2759.78Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

AT4G39250.1 RAD-like 11.1e-2862.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAATCTGGCAAGAGCCGT
CGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGAC
CTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
GTTTTCCGTGGAAAGCAACAGGTAAAAGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGA
AAATGGCAGCAAAAAAGAGAAAGAAAATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAA
ACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAAC
GACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGAC
CAAGAACAGAGGATGAGGAGTCTACAATTGAATTGAAGTAGGAATGTGGGAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAAC
CAACAAATATTTATGAAATAATGTAGCTTACATAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTT
TATATTAAATAAATACCCTTTAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATT
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN