CuGenDBv2

Gene ID	IVF0007949
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L39
Genome location	chr03:23056366..23058648
RNA-Seq Expression	IVF0007949
Synteny	IVF0007949
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652209.1 hypothetical protein Csa_022247, partial [Cucumis sativus]

1.24e-30

98.21

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Query:  GFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
        GFRSFCSL VALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
Subjt:  GFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]

3.61e-31

100

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.21e-32

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Query:  VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.32e-33

92.54

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Query:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

1.83e-33

92.54

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Query:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

1.7e-35

98.72

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Query:  MARESTGFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MARESTGFRSFCSL VALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MARESTGFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein

1.1e-21

96.36

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A368RK84 Uncharacterized protein

4.8e-22

86.89

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Query:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

6.1e-25

92.54

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Query:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

K3YM29 Uncharacterized protein

4.8e-22

86.89

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Query:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

1.0e-21

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

2.1e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

2.1e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

6.0e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

2.1e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

8.4e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

2.4e-21

90.2

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

7.3e-23

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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ATGGCCCGAGAGTCAACAGGTTTCCGTTCCTTTTGTTCGCTGTTGGTGGCCCTCGTCGCAGCCGGTTGCCGAATCTCCAAGATGCCGTCTCACAAGACCTTCAGAATCAA
GAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACTGATAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCA
CCAAGCTCGGATTCTGA

mRNA sequence

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Protein sequence

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MARESTGFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

IVF0007949 (gene) of Melon (IVF77) v1 genome