CuGenDBv2

Gene ID	IVF0007980
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr10:24436992..24437896
RNA-Seq Expression	IVF0007980
Synteny	IVF0007980
Gene Ontology terms	NA
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

3.45e-135

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

3.45e-135

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

KAA0051058.1 retrotransposon protein [Cucumis melo var. makuwa]

1.99e-134

75.28

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Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRS+NGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

KAA0051960.1 retrotransposon protein [Cucumis melo var. makuwa]

5.69e-134

74.91

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECL+ELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRT IEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]

3.45e-135

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2A6 Retrotransposon protein

5.0e-106

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

A0A5A7UME4 Retrotransposon protein

5.0e-106

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

A0A5D3CBF7 Retrotransposon protein

5.0e-106

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

A0A5D3DPR5 Retrotransposon protein

5.0e-106

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

E5GCB5 Retrotransposon protein

5.0e-106

75.65

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
        VAEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  VAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR LEAIPELTLMDRCRLMRI
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGACAA
TGGGACCTTTCGTCCCGGGTACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTCTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGA
AGAGAATGTTTCATGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGG
GTAAAGGTTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGG
ACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGATGCTACCCAAA
CACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATTTATGCGTAA

mRNA sequence

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Protein sequence

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MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW
VKVPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIYA

IVF0007980 (gene) of Melon (IVF77) v1 genome