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IVF0008000 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008000
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr07:11470457..11470762
RNA-Seq ExpressionIVF0008000
SyntenyIVF0008000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049656.1 hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa]2.72e-1042.86Show/hide
Query:  KDEVDEDYVFKFMDIFICKSLENGIEHIIY------------QRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQ
        ++EVD  YVFKF+D FICK LE G E                Q++++DLELK+DN + +N+AQ+ Q + ++ +LKMQ
Subjt:  KDEVDEDYVFKFMDIFICKSLENGIEHIIY------------QRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQ

KAA0063408.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.73e-0635.29Show/hide
Query:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQL
        ++ +DEDY  KF+D  +CK + N  E            H+  Q++ +DLELK DNTN  N  Q+   + ++  LK QN +   QL
Subjt:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQL

KAA0064201.1 hypothetical protein E6C27_scaffold548G001430 [Cucumis melo var. makuwa]1.86e-0978.79Show/hide
Query:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII
        +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Subjt:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII

TYK02827.1 hypothetical protein E5676_scaffold218G00190 [Cucumis melo var. makuwa]2.36e-0978.79Show/hide
Query:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII
        +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Subjt:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII

TYK07283.1 hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa]1.07e-0934.38Show/hide
Query:  RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE
        R  +D  DE+Y+FKF+D ++CK + NG E            H+  Q++L D E+K+ N N +++AQ+  LK ++  L+ QNQ+ + Q+  + E  E
Subjt:  RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE

TrEMBL top hitse value%identityAlignment
A0A5A7V749 Ty3-gypsy retrotransposon protein3.9e-0435.29Show/hide
Query:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQL
        ++ +DEDY  KF+D  +CK + N  E            H+  Q++ +DLELK DNTN  N  Q+   + ++  LK QN +   QL
Subjt:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQL

A0A5A7VEP3 Uncharacterized protein3.2e-0678.79Show/hide
Query:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII
        +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Subjt:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII

A0A5D3BTN1 Uncharacterized protein3.2e-0678.79Show/hide
Query:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII
        +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Subjt:  MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII

A0A5D3C5U6 Uncharacterized protein1.9e-0634.38Show/hide
Query:  RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE
        R  +D  DE+Y+FKF+D ++CK + NG E            H+  Q++L D E+K+ N N +++AQ+  LK ++  L+ QNQ+ + Q+  + E  E
Subjt:  RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE

A0A5D3D645 Uncharacterized protein5.5e-0638.04Show/hide
Query:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKT
        ++EVD  YVFKF+D FICK LE G E             +  Q++++DLELK+DN + +N+AQ+ Q + ++ +LKMQ +  +  +   + KT
Subjt:  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAGGAAAAGATGAAGTTGATGAGGATTATGTCTTCAAGTTCATGGACATTTTCATATGTAAGTCTTTGGAGAATGGAATTGAACATATAATCTATCAAAGAAA
ATTAAACGATTTAGAGTTGAAGATGGACAACACAAACGTAAACAATGAGGCACAATTACATCAACTTAAAAGAAAAATAACAAGACTCAAAATGCAGAATCAGGATTTCC
AAAAGCAACTTCTTGCTATGAGGGAGAAAACTGAGGCGATGAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAGGAAAAGATGAAGTTGATGAGGATTATGTCTTCAAGTTCATGGACATTTTCATATGTAAGTCTTTGGAGAATGGAATTGAACATATAATCTATCAAAGAAA
ATTAAACGATTTAGAGTTGAAGATGGACAACACAAACGTAAACAATGAGGCACAATTACATCAACTTAAAAGAAAAATAACAAGACTCAAAATGCAGAATCAGGATTTCC
AAAAGCAACTTCTTGCTATGAGGGAGAAAACTGAGGCGATGAGGGAATAG
Protein sequenceShow/hide protein sequence
MRGGKDEVDEDYVFKFMDIFICKSLENGIEHIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTEAMRE