; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008039 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008039
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:19477958..19483588
RNA-Seq ExpressionIVF0008039
SyntenyIVF0008039
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054019.1 retrotransposon protein [Cucumis melo var. makuwa]5.06e-7399.05Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDV
        SQED+
Subjt:  SQEDV

KAA0055950.1 retrotransposon protein [Cucumis melo var. makuwa]6.03e-5066.4Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGP+CS FGWNDE KCII E +L DNWVR HP AK LLNK F YYDEL YVF +DRATGR  ETF D+GS +P  YEGF   DGN+  +P +YSQG +M
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDVWAPRPSSASDSRTRSSGSKR
         Q DV A RPS AS+ RTRS+GSKR
Subjt:  SQEDVWAPRPSSASDSRTRSSGSKR

KAA0067987.1 retrotransposon protein [Cucumis melo var. makuwa]8.07e-5065.87Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSR-YEGFQPPDGNDMEIPTIYSQGFN
        MRGP+CS FGWNDE KCII E  L DNWVR HP AK L+NK FPYYDEL YVF +DRATGR  ETF D+GSN+P   Y+ F   DGN  + P++YSQG +
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSR-YEGFQPPDGNDMEIPTIYSQGFN

Query:  MSQEDVWAPRPSSASDSRTRSSGSKR
        +SQ+DV A RPS AS+ RTRSSGSKR
Subjt:  MSQEDVWAPRPSSASDSRTRSSGSKR

XP_008444620.1 PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]1.13e-90100Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDVWAPRPSSASDSRTRSSGSKRGSV
        SQEDVWAPRPSSASDSRTRSSGSKRGSV
Subjt:  SQEDVWAPRPSSASDSRTRSSGSKRGSV

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]2.21e-4965.6Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGPSC  FGWND+ KCI+ E +L DNWVR HP AK LLNK FPYYDELAYVF KDRA G   ETF D+GSN P  +E F P D NDME P++ S  FNM
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDVWAPRPSSASDSRTRSSGSKR
        SQ+D+   RPS  +DSRT SSGSKR
Subjt:  SQEDVWAPRPSSASDSRTRSSGSKR

TrEMBL top hitse value%identityAlignment
A0A1S3BAQ2 uncharacterized protein LOC1034878865.0e-69100Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDVWAPRPSSASDSRTRSSGSKRGSV
        SQEDVWAPRPSSASDSRTRSSGSKRGSV
Subjt:  SQEDVWAPRPSSASDSRTRSSGSKRGSV

A0A5A7ULC5 Retrotransposon protein1.4e-3966.4Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGP+CS FGWNDE KCII E +L DNWVR HP AK LLNK F YYDEL YVF +DRATGR  ETF D+GS +P  YEGF   DGN+  +P +YSQG +M
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDVWAPRPSSASDSRTRSSGSKR
         Q DV A RPS AS+ RTRS+GSKR
Subjt:  SQEDVWAPRPSSASDSRTRSSGSKR

A0A5A7V6Q9 Retrotransposon protein2.4e-3965.87Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEIPTIYSQGFN
        MRGP+CS FGWNDE KCI+ E +L DNWVR HP AK LLNKSFPYYDEL YVF +DRATGR  ETF D+GSN+P   Y+ F   DGN+ + P +YSQG +
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEIPTIYSQGFN

Query:  MSQEDVWAPRPSSASDSRTRSSGSKR
        +SQ+DV A RPS AS+ RT SSGSKR
Subjt:  MSQEDVWAPRPSSASDSRTRSSGSKR

A0A5A7VL88 Retrotransposon protein1.9e-3965.87Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEIPTIYSQGFN
        MRGP+CS FGWNDE KCII E  L DNWVR HP AK L+NK FPYYDEL YVF +DRATGR  ETF D+GSN+P   Y+ F   DGN  + P++YSQG +
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEIPTIYSQGFN

Query:  MSQEDVWAPRPSSASDSRTRSSGSKR
        +SQ+DV A RPS AS+ RTRSSGSKR
Subjt:  MSQEDVWAPRPSSASDSRTRSSGSKR

A0A5D3DB07 Retrotransposon protein3.7e-5699.05Show/hide
Query:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
        MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM
Subjt:  MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNM

Query:  SQEDV
        SQED+
Subjt:  SQEDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein1.5e-0428.3Show/hide
Query:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGR
        F W+     +I ++D+ + +++ HP A++   K+ P Y  L ++F K+ + GR
Subjt:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGR

AT4G02210.1 unknown protein2.5e-0425Show/hide
Query:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTD
        F W+D  + ++ +N + D +++IHP +++   KS P Y +L  V+    +  +  E+ ++
Subjt:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTD

AT4G02210.2 unknown protein2.5e-0425Show/hide
Query:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTD
        F W+D  + ++ +N + D +++IHP +++   KS P Y +L  V+    +  +  E+ ++
Subjt:  FGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTD

AT5G27260.1 unknown protein5.6e-0428.57Show/hide
Query:  SRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPP
        S FGW+   K     +++  ++++ HP  K L   +F ++DEL  +F +  ATG+      D  S D   Y   + P
Subjt:  SRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGCCCATCATGCAGTCGGTTCGGGTGGAATGATGAAGCAAAGTGCATAATTGGTGAGAATGACTTGTCTGACAACTGGGTCAGGATACATCCTGTAGCAAAGGC
CCTCCTGAACAAATCATTTCCCTATTACGACGAACTGGCCTATGTGTTCAAGAAAGATAGGGCGACGGGTCGAGGTGTAGAGACTTTCACCGACATTGGGTCCAATGATC
CTAGCAGGTACGAGGGATTTCAACCGCCTGATGGAAACGATATGGAGATCCCCACCATTTACAGCCAGGGCTTTAACATGTCCCAAGAGGATGTATGGGCCCCACGACCT
AGTTCAGCATCCGACAGTAGGACCAGATCGAGCGGATCAAAGCGGGGCAGTGTGTGA
mRNA sequenceShow/hide mRNA sequence
TCTTCATTGCCAATTTTTCTTCTTTCTTTTTCTCCCTTTACTCTTTCATTGCCGATTTTTCTTCTTTCGGTGTGAGACATCTTGTCGTTCGTTTTATCACCTGAAAAAGA
AATTACCTTGGATCTAAAATCCCCTTTTCTTCTTTTTGCAATCCATCTCTAAATTAGTCTAAACCTTCTCTCTCACTCATCGAAACTGGAAATTGTTTTGTTGAAGCCTT
TGCTCCGGTGACTTTACCTTTGAAACATTTTGGTTTCTCCTTTTTGGTTTTGTTAAATGGCTGGGACAATTCATTACCTCTAAAACCTTGCCTTACACGTTCAATGTGTT
TTCTCGATGAACATGCAAGTTCGTTGTTGTCCCTTGGAATTTCCCTTGCCACTCGACGAACCCTTTTGTCGCTCGGTCTTTCGCTTGCCGATTGGTGTTTCTCTTCACCG
AGTTAGGACATGTGCTACACAACAAACCGTTTGTGGCAATTGGTGACTGTCGAGCATGGTAGGAAGGACGTCAGCCTTCATAATACCCTTGTAAGAGTTTCCTAATGTCA
GCTAATTCTAACATTGGAGGCACTCATGAACGACAATAAGTGGCTAACACATACACCTTAAGATACTAGACATAGAATTAGGTAGCTTGCATACTTCCATATGATACACG
AGTTGGACCTAGTCTGTCATCGAAGTACTCGAATGGACAGGCAGACATTTGTTATTCTATGCCATTTACTAAGGACTGTTGCTGGGCTTTCATCAACGGAAATTGTCGAT
GTTGAGGAAATGTTAAATGTTCTTGCACGTCCTTGCCCATGATGTGAAGAACCGAGTTATTCAAAGGGAATTCGTGCGGTCCGGTGAGATTGTTTCCCAACATTTCAACC
TCATCTTGTTAGTTGTGATACGACTGCACAACAAGTTGCTAAAGAAACTGCAGCCAGTAACCAACACATGCATCAATCCACAGTGGAAATGCTTCGAGAATTGTCTTAGG
ACGGGACATATATAAAGGTGAACGTGCTACAAATCGATCGACCTAGGTATAGAACGCGTAAGGGAAAAGTTTCCACTAATGTCCTCGGAGTGTGTGACATGAAAAGCGAT
TTCGTATTCGTTCTGGCAAGTTGGGAAGGATCCGCAGCCGATTAGCGCATTCTCCGAGATGTGCTTGCACAGCCAAACGGACTGCAAGTTCCTAAGGAGTTTTACTATAT
GTGCAATGCGGGGTATCTAAACACGGAGGGATTTTTTGCTCCTTACAGAGGGCAGAGGTACCATCTGCAAGAGTGGCGTGGCATTGGAAATGCACCAACCATTTCCAAAG
AGTACTTCGATATGAAATAGTTATCCACACGGAATGTTATTGAACGCACGTTCGATCTTTTGAAGGGTCGCTGGGCAATCCTTCATGGCAAGTCATACTACCCCATCCAA
GTGCAATATTGCACCATTCTTGCATGTTGCCTACTACACAATCTGATAAACAGGGAGATGGCAAATGCTGATGATTTAGAGGACATTGACGAGGGAGACTCGACATACGC
AATGATCACAGGTGACGACATTCACTACATTGAGACCTCGAATGAATGGACCCAATGTTGGGATGAATCAGCCGCGACGATGTTCAACGAATGACATATGGCAAGTTTGT
CGTGTGCACCTCAGCTTGTCCGAATGATGACTGCGAAGTTGCTTCGATGTAATGTCCAAGCCACAACTGTAATAGACTGTCGCATAAAGACATTGAAGCGGACCTTCTAG
GCAATCACAAAAATGCGTGGCCCATCATGCAGTCGGTTCGGGTGGAATGATGAAGCAAAGTGCATAATTGGTGAGAATGACTTGTCTGACAACTGGGTCAGGATACATCC
TGTAGCAAAGGCCCTCCTGAACAAATCATTTCCCTATTACGACGAACTGGCCTATGTGTTCAAGAAAGATAGGGCGACGGGTCGAGGTGTAGAGACTTTCACCGACATTG
GGTCCAATGATCCTAGCAGGTACGAGGGATTTCAACCGCCTGATGGAAACGATATGGAGATCCCCACCATTTACAGCCAGGGCTTTAACATGTCCCAAGAGGATGTATGG
GCCCCACGACCTAGTTCAGCATCCGACAGTAGGACCAGATCGAGCGGATCAAAGCGGGGCAGTGTGTGATTGTTGTTGACTTAATTTCTGAGACGATGGAGTATGCGAAT
GACTAGCTGAAGACCATTGTCGAGTGGTCTTCTGTTGCGCTTCAGAATGAAACCATAGTCCGCCAGGAAGTTCTTCACCAATTGTGTGCGATCCCCAAACTAAGTAGGTT
GGACAGGGCATGCTGCTTGCAGATCCTCTTTCGCAGTTTGGACGACATGAAAGGTTTCCTTGAGATACCTAAGAACAAGAAGATAGACTTTGGCACGATCCTTCTACGAG
AAGAATCATGATTGCTCTTCTACTTCCATCGCCTG
Protein sequenceShow/hide protein sequence
MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDVWAPRP
SSASDSRTRSSGSKRGSV