; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008057 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008057
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:16751809..16752438
RNA-Seq ExpressionIVF0008057
SyntenyIVF0008057
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.08e-4563.58Show/hide
Query:  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV
        III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+                       FIFSHMLQ+R  SSSSSHM   +EDHHLHLLTCV
Subjt:  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV

Query:  ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF
        A +R  IFIFS VLQ R SSSSS +MCCS+ED HLHL  CV  ERIIIFIF
Subjt:  ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]1.18e-9572.73Show/hide
Query:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSH-------------------DHQLYLLTCVTA
        MCC+REDHHLHL TCVA  RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA  RI+I IFSH                   DH L+LLTC+  
Subjt:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSH-------------------DHQLYLLTCVTA

Query:  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSL
        ERII F FSH+LQ RGSSS SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCVA+E+IIIFIFSHVLQ +GS 
Subjt:  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSL

Query:  SPSSHMYCS
        S SSHM CS
Subjt:  SPSSHMYCS

KAA0045115.1 hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa]1.18e-4356.67Show/hide
Query:  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVA
        II IFSH+LQ +GSSSSS +MCCNR+D HL                        LT V+AERIIIFIFSH+LQ RGS SSSS MC  +EDHHLHLLT  A
Subjt:  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVA

Query:  DKRIIIFIFSHVLQSRRSSSSSSHM-----------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS
         +RI IFIFSH+LQ R SSSSSSH+               ED  LHL TCV +ERI  FIFSHVLQ +GS   SSHM CS
Subjt:  DKRIIIFIFSHVLQSRRSSSSSSHM-----------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]2.05e-4454.76Show/hide
Query:  REDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILIS--IFSH------------------DHQLYLLTCVTAERI
        REDHHLHL TCVA  RIII IFSH+LQS+ SS SS +MC ++E HHL+LLTCVA  +I I   IFSH                  DH L+L + V AER 
Subjt:  REDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILIS--IFSH------------------DHQLYLLTCVTAERI

Query:  IIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV-------------ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF
         IFIF HMLQ RGSSSSSS MCC QEDHHL L  C                +RII+FIF+ V Q +RSSSSSS M  SR D HLHL  C A E IIIFI 
Subjt:  IIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV-------------ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF

Query:  S---HVLQLQ
        +   H L LQ
Subjt:  S---HVLQLQ

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.48e-6062.19Show/hide
Query:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT------------CVAAARILISIFSHDHQLYLLTCVTAERIIIFI
        +CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T            C +   + +     DH L+LLTC  A+RIIIFI
Subjt:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT------------CVAAARILISIFSHDHQLYLLTCVTAERIIIFI

Query:  FSHMLQTRGSSSSSSHMCCRQEDHHLH--LLTCVADKRIIIFIF--SHVLQSR--RSSSSSSHMCCSREDHHLHLF--TCVAIERIIIFIF--SHVLQLQ
        F+ +LQ RGS SSSSH+ C +ED HLH  LLTCV+ ++IIIFIF  SHVLQ R   SSSSSSHMCCSR+D HLHL+  TCVA ERIIIFIF  SHVLQ +
Subjt:  FSHMLQTRGSSSSSSHMCCRQEDHHLH--LLTCVADKRIIIFIF--SHVLQSR--RSSSSSSHMCCSREDHHLHLF--TCVAIERIIIFIF--SHVLQLQ

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A5A7SWZ9 Ty3-gypsy retrotransposon protein1.7e-3663.58Show/hide
Query:  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV
        III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+                       FIFSHMLQ+R  SSSSSHM   +EDHHLHLLTCV
Subjt:  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCV

Query:  ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF
        A +R  IFIFS VLQ R SSSSS +MCCS+ED HLHL  CV  ERIIIFIF
Subjt:  ADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIF

A0A5A7TBX4 Uncharacterized protein1.5e-7772.73Show/hide
Query:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSH-------------------DHQLYLLTCVTA
        MCC+REDHHLHL TCVA  RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA  RI+I IFSH                   DH L+LLTC+  
Subjt:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSH-------------------DHQLYLLTCVTA

Query:  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSL
        ERII F FSH+LQ RGSSS SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCVA+E+IIIFIFSHVLQ +GS 
Subjt:  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSL

Query:  SPSSHMYCS
        S SSHM CS
Subjt:  SPSSHMYCS

A0A5A7TUQ7 Uncharacterized protein1.3e-3356.18Show/hide
Query:  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVA
        II IFSH+LQ +GSSSSS +MCCNR+D                        L+LLT V+AERIIIFIFSH+LQ RGS SSSS MC  +EDHHLHLLT  A
Subjt:  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVA

Query:  DKRIIIFIFSHVLQSRRSSSSSSHM---------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS
         +RI IFIFSH+LQ R SSSSSSH+             +   LHL TCV +ER  IFIFSHVLQ +G  S SSHM CS
Subjt:  DKRIIIFIFSHVLQSRRSSSSSSHM---------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS

A0A5A7U1J1 Uncharacterized protein5.2e-3856.84Show/hide
Query:  CNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSS
        C +    + + T V    I I IF+HVLQ +GSSSSS H+CC+RE+HHLH             +F  DH L+L TCV  ERIIIFIFSHMLQ+R SS SS
Subjt:  CNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSS

Query:  SHMCCRQEDHHLHLLTCVADKRIII--FIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS
        S+MC  QE HHL+LLTCVA ++I I  FIFSH LQ R   SS S M  SREDHHLHL   VA ER  IFIF H+LQ +GS S SS M CS
Subjt:  SHMCCRQEDHHLHLLTCVADKRIII--FIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS

A0A5D3BVC5 Retrotransposon gag protein7.0e-5162.19Show/hide
Query:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT------------CVAAARILISIFSHDHQLYLLTCVTAERIIIFI
        +CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T            C +   + +     DH L+LLTC  A+RIIIFI
Subjt:  MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT------------CVAAARILISIFSHDHQLYLLTCVTAERIIIFI

Query:  FSHMLQTRGSSSSSSHMCCRQEDHHL--HLLTCVADKRII--IFIFSHVLQSR--RSSSSSSHMCCSREDHHLHLF--TCVAIERII--IFIFSHVLQLQ
        F ++LQ RGS SSSSH+ C +ED HL  HLLTCV+ ++II  IFIFSHVLQ R   SSSSSSHMCCSR+D HLHL+  TCVA ERII  IFIFSHVLQ +
Subjt:  FSHMLQTRGSSSSSSHMCCRQEDHHL--HLLTCVADKRII--IFIFSHVLQSR--RSSSSSSHMCCSREDHHLHLF--TCVAIERII--IFIFSHVLQLQ

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATC
TTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTT
ACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAG
GATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTG
TTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCAT
CTTCTCACATGTATTGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATC
TTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTT
ACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAG
GATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTG
TTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCAT
CTTCTCACATGTATTGCAGTTGA
Protein sequenceShow/hide protein sequence
MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQE
DHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS