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IVF0008062 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008062
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:5590562..5590921
RNA-Seq ExpressionIVF0008062
SyntenyIVF0008062
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]6.09e-4972.27Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        +SQ+DV  S+P   SDG+ R S SKRKRGSQREGEL VI+MAL+CMNDQLRTI EWP R   N+T V QEFLRLL +MP+LSSLDR LCQR+LM  IDDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        R FVEMTD+ERKNFCRV L
Subjt:  RGFVEMTDDERKNFCRVLL

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]1.32e-5372.27Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        MSQEDV  SRP+  S G+ R SGSKRKR SQ++GE++VIHMA+EC NDQLRTIAEWPAR L NDTHV QE LRLL  MP L+SLDR LCQR L+S +DDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        RGF++M DDER+NFCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]1.65e-5170.59Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        MSQEDV  S+P   S+ +AR S  KRKRGSQ++GE+KVIHMAL+CMNDQL+ I EW AR L N+THV QEF+RLLR+M  LS+LDRALCQR LMSH+DDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
         GFV+MT+DER+NFCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

KAA0051652.1 retrotransposon protein [Cucumis melo var. makuwa]2.12e-70100Show/hide
Query:  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN
        MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN
Subjt:  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN

Query:  FCRVLL
        FCRVLL
Subjt:  FCRVLL

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]2.70e-4664.71Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        +SQ+DV  SRP+R SDG+   SGSKRKRGSQR+ EL+ IH+AL+  N+QLR IA+WPAR L ND HV  EF R+LR+MP L+SLDRAL QR L+S +DD+
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        RGFV M +DER+ FCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

TrEMBL top hitse value%identityAlignment
A0A5A7T091 Retrotransposon protein6.8e-3664.71Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        +SQ+DVC SRP+R S+G+   SGSKRKRGSQR+ EL+ IH+AL+  N+QLR IAEWPAR L ND H+  EF R+LR+MP L+SLDRAL QR L+S +DD+
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        RGFV M +DER+ FCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

A0A5A7U4I8 Retrotransposon protein3.2e-4172.27Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        MSQEDV  SRP+  S G+ R SGSKRKR SQ++GE++VIHMA+EC NDQLRTIAEWPAR L NDTHV QE LRLL  MP L+SLDR LCQR L+S +DDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        RGF++M DDER+NFCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

A0A5A7U7C8 Retrotransposon protein8.0e-53100Show/hide
Query:  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN
        MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN
Subjt:  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKN

Query:  FCRVLL
        FCRVLL
Subjt:  FCRVLL

A0A5A7U9D5 Retrotransposon protein2.3e-3970.59Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        MSQEDV  S+P   S+ +AR S  KRKRGSQ++GE+KVIHMAL+CMNDQL+ I EW AR L N+THV QEF+RLLR+M  LS+LDRALCQR LMSH+DDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
         GFV+MT+DER+NFCRVLL
Subjt:  RGFVEMTDDERKNFCRVLL

A0A5D3BQI7 Retrotransposon protein5.1e-3972.27Show/hide
Query:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM
        +SQ+DV  S+P   SDG+ R S SKRKRGSQREGEL VI+MAL+CMNDQLRTI EWP R   N+T V QEFLRLL +MP+LSSLDR LCQR+LM  IDDM
Subjt:  MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDM

Query:  RGFVEMTDDERKNFCRVLL
        R FVEMTD+ERKNFCRV L
Subjt:  RGFVEMTDDERKNFCRVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGGAGGATGTATGCGTATCACGACCTACTCGCATGTCAGACGGTAAGGCTAGATTGAGCGGATCGAAGAGAAAGAGGGGAAGCCAACGAGAGGGTGAGCTTAA
AGTCATACATATGGCTCTTGAGTGTATGAATGACCAACTCAGGACGATTGCCGAGTGGCCTGCACGCACCCTTACCAATGACACTCATGTTTGCCAGGAATTCTTACGCC
TATTGCGTAAGATGCCTAACCTAAGCAGTTTGGATAGAGCGTTGTGCCAAAGGGAGTTGATGTCTCATATAGACGACATGCGGGGTTTCGTAGAGATGACTGACGATGAG
AGGAAGAACTTTTGTAGAGTCCTCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGGAGGATGTATGCGTATCACGACCTACTCGCATGTCAGACGGTAAGGCTAGATTGAGCGGATCGAAGAGAAAGAGGGGAAGCCAACGAGAGGGTGAGCTTAA
AGTCATACATATGGCTCTTGAGTGTATGAATGACCAACTCAGGACGATTGCCGAGTGGCCTGCACGCACCCTTACCAATGACACTCATGTTTGCCAGGAATTCTTACGCC
TATTGCGTAAGATGCCTAACCTAAGCAGTTTGGATAGAGCGTTGTGCCAAAGGGAGTTGATGTCTCATATAGACGACATGCGGGGTTTCGTAGAGATGACTGACGATGAG
AGGAAGAACTTTTGTAGAGTCCTCCTATGA
Protein sequenceShow/hide protein sequence
MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDE
RKNFCRVLL