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IVF0008063 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008063
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRING-type domain-containing protein
Genome locationchr01:4473378..4473758
RNA-Seq ExpressionIVF0008063
SyntenyIVF0008063
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0030121 - AP-1 adaptor complex (cellular component)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050549.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa]8.02e-4698.73Show/hide
Query:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV
        MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHL+
Subjt:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV

KAE8645705.1 hypothetical protein Csa_020389 [Cucumis sativus]4.07e-4790.11Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV
        MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLLVCRFEELQR VGSEEEICS+CLTEFTREHL+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV

KAF8020737.1 hypothetical protein BT93_G1238 [Corymbia citriodora subsp. variegata]2.40e-2943.65Show/hide
Query:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE--------ICSICLTEFTREHLVSQMHRCSHVF
           +S A ++F TC+W+PL QL+ A+  +   +S +  P  ++  C  +L V RF++LQ+  G+EEE         CSICL ++  EHLVS++HRC HVF
Subjt:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE--------ICSICLTEFTREHLVSQMHRCSHVF

Query:  HLECIESWLQRNRFTCPLCRSFIVQV
        H++CIE WL+R++FTCPLCR  +  V
Subjt:  HLECIESWLQRNRFTCPLCRSFIVQV

XP_010027388.2 RING-H2 finger protein ATL18 [Eucalyptus grandis]1.69e-2942.4Show/hide
Query:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE-------ICSICLTEFTREHLVSQMHRCSHVFH
        +  +S A ++F TC+W+PL QL+ A++ +   +  +  P   +  C  +L V RF++LQ+  G EE+        CSICL ++  EHLVS++HRC HVFH
Subjt:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE-------ICSICLTEFTREHLVSQMHRCSHVFH

Query:  LECIESWLQRNRFTCPLCRSFIVQV
        ++CIE WL+R++FTCPLCR  +  V
Subjt:  LECIESWLQRNRFTCPLCRSFIVQV

XP_030539517.1 RING-H2 finger protein ATL18-like [Rhodamnia argentea]4.08e-3045.16Show/hide
Query:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE------ICSICLTEFTREHLVSQMHRCSHVFHL
        +  +S A ++F TC+W+PL QL+ AI+ +   +S +  P  ++  C  +L V RF++LQ+  G EEE       CSICL ++  E LVS++HRC HVFHL
Subjt:  RGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEE------ICSICLTEFTREHLVSQMHRCSHVFHL

Query:  ECIESWLQRNRFTCPLCRSFIVQV
        +CIE WL+R++FTCPLCR  +  V
Subjt:  ECIESWLQRNRFTCPLCRSFIVQV

TrEMBL top hitse value%identityAlignment
A0A0A0K513 RING-type domain-containing protein2.1e-5990.62Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV
        MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLLVCRFEELQR VGSEEEICS+CLTEFTREHLVSQ+HRCSHV
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIVQVL
        FHLECIESWLQRN+FTCPLCRSFI Q L
Subjt:  FHLECIESWLQRNRFTCPLCRSFIVQVL

A0A0D2SLB9 RING-type domain-containing protein3.9e-2142.86Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG----SEEEICSICLTEFTREHLVSQMHRCS
        MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V RFE+L+   G    +EEE+CSICL EF  +  VSQ+ +C 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG----SEEEICSICLTEFTREHLVSQMHRCS

Query:  HVFHLECIESWLQRNRFTCPLCRSFI
        HVFH+ CIE W++R  FTCPLCRS +
Subjt:  HVFHLECIESWLQRNRFTCPLCRSFI

A0A5D2M180 RING-type domain-containing protein3.9e-2142.86Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG----SEEEICSICLTEFTREHLVSQMHRCS
        MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V RFE+L+   G    +EEE+CSICL EF  +  VSQ+ +C 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG----SEEEICSICLTEFTREHLVSQMHRCS

Query:  HVFHLECIESWLQRNRFTCPLCRSFI
        HVFH+ CIE W++R  FTCPLCRS +
Subjt:  HVFHLECIESWLQRNRFTCPLCRSFI

A0A5D3D5G1 AP-1 complex subunit sigma-21.2e-3598.73Show/hide
Query:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV
        MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHL+
Subjt:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLV

A0A6P6AC29 RING-H2 finger protein ATL18-like1.0e-2142.96Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDIL-----SGRTCPMLTTVPCEVKLLVCRFEELQRGVGSE--------EEICSICLTEFTREH
        MI +      +S A ++F TCVWIP  QLK A+  +   +     +  +C ++      V L V RFE+L+   GS         EE+CSICL EF +E 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDIL-----SGRTCPMLTTVPCEVKLLVCRFEELQRGVGSE--------EEICSICLTEFTREH

Query:  LVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        +VSQ+H+C H+FH+ CIE WL R++FTCPLCRSF+
Subjt:  LVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

SwissProt top hitse value%identityAlignment
Q84TF5 Probable E3 ubiquitin-protein ligase RHA4A2.8e-0838.46Show/hide
Query:  CPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        C +   V  + KL V  F E    +G+ + +C +CL EF  +  + +M  C H+FHL+CI  WL  +  TCPLCRS +
Subjt:  CPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

Q9FL07 RING-H2 finger protein ATL463.6e-0848.08Show/hide
Query:  GVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR
        G   E   C++CL EF+ +  +  +  CSH FHL CI++WLQ N  TCPLCR
Subjt:  GVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR

Q9LSW9 RING-H2 finger protein ATL162.1e-0848.28Show/hide
Query:  GVGSEEE-----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        G G EEE      CS+CL+EF  E  +  +  CSH+FH++CI+ WLQ N   CPLCR+
Subjt:  GVGSEEE-----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

Q9SZL4 RING-H2 finger protein ATL187.5e-1438.4Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV
        MI M   R  +  A +VF TCV IPL +LK     A   D                  L+   F + ++    EE  C ICL EF  E  V+ + RC+H+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIV
        FH+ CIE WL R   TCPLCRSF++
Subjt:  FHLECIESWLQRNRFTCPLCRSFIV

Q9XF92 Brassinosteroid-responsive RING protein 15.6e-0939.06Show/hide
Query:  LLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        L V +FEEL        E C++CL EF  E  +  +  C H+FH  C++ W+  ++ TCPLCR+
Subjt:  LLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein1.1e-0929.36Show/hide
Query:  IPLSQLKAAIASMFDILSGRTCPMLTTVP------CEVKLLVCRFEELQRGVGSEEE----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF
        + ++ LK  + S+F I++  T   +             ++ + +F+ L   +  EEE     C +CL  F  E  VS++  C H FH  C+++W   N  
Subjt:  IPLSQLKAAIASMFDILSGRTCPMLTTVP------CEVKLLVCRFEELQRGVGSEEE----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF

Query:  TCPLCRSFI
        TCPLCRS +
Subjt:  TCPLCRSFI

AT1G67856.1 RING/U-box superfamily protein1.5e-0938.03Show/hide
Query:  KLLVCRFEELQRGVGSEEE----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        ++ +  FE L    GS  E     C +CL  F  E  VS++  C H FH  C++ W   N  TCPLCRS +
Subjt:  KLLVCRFEELQRGVGSEEE----ICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

AT3G61460.1 brassinosteroid-responsive RING-H23.9e-1039.06Show/hide
Query:  LLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        L V +FEEL        E C++CL EF  E  +  +  C H+FH  C++ W+  ++ TCPLCR+
Subjt:  LLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

AT4G33565.1 RING/U-box superfamily protein1.1e-0940.24Show/hide
Query:  RTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQ
        RT  +  TV   +K  VC++ +    V  E   CS+CL+EF  E  +  + +C H FHL CI++WL R+   CPLCR+ IV+
Subjt:  RTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQ

AT4G38140.1 RING/U-box superfamily protein5.3e-1538.4Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV
        MI M   R  +  A +VF TCV IPL +LK     A   D                  L+   F + ++    EE  C ICL EF  E  V+ + RC+H+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIV
        FH+ CIE WL R   TCPLCRSF++
Subjt:  FHLECIESWLQRNRFTCPLCRSFIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTT
TGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAGTACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGG
AAATTTGCTCCATTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGA
AACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTT
TGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAGTACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGG
AAATTTGCTCCATTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGA
AACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA
Protein sequenceShow/hide protein sequence
MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVGSEEEICSICLTEFTREHLVSQMHRCSHVFHLECIESWLQR
NRFTCPLCRSFIVQVL