CuGenDBv2

Gene ID	IVF0008076
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr04:5536954..5537649
RNA-Seq Expression	IVF0008076
Synteny	IVF0008076
Gene Ontology terms	GO:0007165 - signal transduction (biological process) GO:0003953 - NAD+ nucleosidase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.53e-112

74.89

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLE+ GAIKGV L NDCNISHIL ADDILLFVED   +LKNLRMA+SLFEKA GLKINL+KS +V VNVP  RA ECASSW ISC TLPL+
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKSKLFWR+IED+IQKKL+NWKYAHISKGG+LTLIKSTLSSLPIYQL                +RNFL KGS GSKGSHL+NW+ VTKPK+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EG LGI K+Q TNQALL+KWLWRYY EP +L
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

KAA0066579.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.25e-111

73.59

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLEA+GAIKGVSL N+CNISHIL ADDILLF+ED   FL NLRMAL LFEKA GLKINL+KS+LV VNV LNRAKECAS W ISC +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKY  ISKGG+LTLIKSTLSSLPIYQL                +RNFL KGS+GSK SHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TN+ALL+KWLWRY+ EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

TYK05718.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.55e-107

72.29

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLE++GAIKGVSLN++CNIS+IL ADDILLF+ED  CFL NLRMALSLFE+A GLKINL KS+LV +NV LNRAKECAS WGIS  +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKYA ISKGG+LTLIKSTLSSLPIYQL                +R FL KG++GS+GSHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TN+ALL+KWLWRY  EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

TYK15315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.93e-114

74.03

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLEA+GAIKGVSLNN+CNISHIL ADDILLF+ED   FL NLRMAL LFEKA GLKINL+KS+LV VNV LNRAKECAS W ISC +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKY  ISKGG+LTLIKSTLSSLPIYQL                +RNFL KGS+GSKGSHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TN+ LL+KWLWRY+ EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

XP_016903538.1 PREDICTED: uncharacterized protein LOC107992224 [Cucumis melo]

3.01e-107

100

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQLF
        YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQLF
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQLF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VMW0 LINE-1 retrotransposable element ORF2 protein

1.1e-87

73.59

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLEA+GAIKGVSL N+CNISHIL ADDILLF+ED   FL NLRMAL LFEKA GLKINL+KS+LV VNV LNRAKECAS W ISC +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKY  ISKGG+LTLIKSTLSSLPIYQL                +RNFL KGS+GSK SHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TN+ALL+KWLWRY+ EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein

7.4e-89

73.16

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLE++GAIKGVSLN +CNISHIL ADDILLF+ED  CFLKNLRMALSLFE+A GLKINL KS+LV VNV L RAKECAS WGISC +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKYA ISKGG+LTLIKSTLSSLPIYQ                L+R FL KG++GS+GSHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++  TN+ALL+KWLWRY  EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein

5.6e-89

74.46

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLE+ GAIKGV L NDCNISHIL ADDILLFVED   +L NLRMA+SLFEKA GLKINL KS +V+VNV   RA ECASSW ISC TLPL+
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKSKLFWR+IED+IQKKL+NWKYAHISKGG+LTLIKSTLSSLPIYQ                L+RNFL KGS GSKGSHL+NWS VTKPK+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TNQALL+KWLWRYY EP +L
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein

2.5e-89

74.89

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Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLE+ GAIKGV L NDCNISHIL ADDILLFVED   +LKNLRMA+SLFEKA GLKINL+KS +V VNVP  RA ECASSW ISC TLPL+
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKSKLFWR+IED+IQKKL+NWKYAHISKGG+LTLIKSTLSSLPIYQ                L+RNFL KGS GSKGSHL+NW+ VTKPK+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQ----------------LFRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EG LGI K+Q TNQALL+KWLWRYY EP +L
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

A0A5D3CUY8 LINE-1 retrotransposable element ORF2 protein

5.6e-89

74.03

Show/hide

Query:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS
        MDYLSRLL+HLEA+GAIKGVSLNN+CNISHIL ADDILLF+ED   FL NLRMAL LFEKA GLKINL+KS+LV VNV LNRAKECAS W ISC +LPLS
Subjt:  MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLS

Query:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK
        YLGV LGGNPKS LFWR++EDKIQKKLNNWKY  ISKGG+LTLIKSTLSSLPIYQL                +RNFL KGS+GSKGSHL+NW+KV+K K+
Subjt:  YLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------------FRNFLSKGSSGSKGSHLVNWSKVTKPKK

Query:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        EGGLGI ++Q TN+ LL+KWLWRY+ EP AL
Subjt:  EGGLGIPKIQETNQALLTKWLWRYYMEPTAL

SwissProt top hits

e value

%identity

Alignment

O00370 LINE-1 retrotransposable element ORF2 protein

8.9e-07

23.92

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Query:  IKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLSYLGVLLGGNPKS--KL
        IKG+ L  +  +   L ADD+++++E+     +NL   +S F K  G KIN+ KS     N       +       +  +  + YLG+ L  + K   K 
Subjt:  IKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLSYLGVLLGGNPKS--KL

Query:  FWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------FRNFLSKGSS----GSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQAL
         ++ +  +I++  N WK    S  G++ ++K  +    IY+           F   L K +       K + +   S +++  K GG+ +P  +   +A 
Subjt:  FWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQL----------FRNFLSKGSS----GSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQAL

Query:  LTKWLWRYY
        +TK  W +Y
Subjt:  LTKWLWRYY

P0C2F6 Putative ribonuclease H protein At1g65750

2.2e-13

36.28

Show/hide

Query:  IEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIY----------------QLFRNFLSKGSSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQALLT
        I +++  +++ W+   +S  G+LTL K+ LSS+P++                QL R FL   ++  K  HLV WSKV  PKKEGGLG+   +  N+AL++
Subjt:  IEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIY----------------QLFRNFLSKGSSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQALLT

Query:  KWLWRYYMEPTAL
        K  WR   E  +L
Subjt:  KWLWRYYMEPTAL

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.7e-09

26.88

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Query:  NRAKECASSWGISCQTLPLSYLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSL----------------PIYQLFRNFLSKG
        N   +   S+  +   LP+ YLG+ L     +   +  + +KI+ ++  W   H+S  G+L LI S + SL                 I  +  +FL  G
Subjt:  NRAKECASSWGISCQTLPLSYLGVLLGGNPKSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSL----------------PIYQLFRNFLSKG

Query:  SSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQ---------ALLTKWLWRYYMEPTAL
           +     V WS V  PK EGGLGI  ++E N+           L  W+W+  ++  AL
Subjt:  SSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQ---------ALLTKWLWRYYMEPTAL

AT4G29090.1 Ribonuclease H-like superfamily protein

9.4e-04

33.33

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Query:  IYQLFRNFLSKGSSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQALLTKWLWRYYMEPTAL
        I  +  +F  +    +KG H   W  ++  K EGG+G   I+  N ALL K +WR    P +L
Subjt:  IYQLFRNFLSKGSSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQALLTKWLWRYYMEPTAL

Sequences

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CDS sequence

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ATGGATTATCTCAGTCGTCTTCTTAATCACTTAGAAGCCAATGGTGCCATCAAAGGAGTGTCCCTCAACAATGATTGCAACATTTCTCATATCCTTTTGGCAGACGACAT
CCTCCTCTTCGTTGAAGATAAGTATTGCTTCCTTAAAAACCTTCGAATGGCTTTATCTCTTTTCGAAAAGGCCTTGGGGCTAAAAATAAATTTAGCCAAATCATCTCTGG
TCTCTGTAAACGTTCCATTGAACAGAGCCAAGGAGTGTGCCTCTTCGTGGGGCATTTCTTGTCAAACTTTACCCCTTTCCTATTTGGGAGTTCTGCTTGGTGGCAACCCA
AAATCCAAGCTTTTTTGGCGCCACATTGAAGATAAGATTCAAAAAAAGCTTAACAATTGGAAATATGCCCATATTTCCAAAGGTGGCAAACTTACTCTAATCAAATCTAC
ACTTAGTAGTCTTCCCATCTATCAACTCTTTAGAAATTTTCTTTCGAAAGGTAGCAGCGGATCGAAAGGTTCTCATTTAGTCAATTGGTCAAAAGTGACTAAACCAAAAA
AGGAGGGAGGCCTGGGTATTCCAAAGATTCAAGAGACAAACCAAGCTCTCTTAACAAAATGGCTTTGGCGGTACTATATGGAACCTACTGCCCTTTAG

mRNA sequence

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Protein sequence

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MDYLSRLLNHLEANGAIKGVSLNNDCNISHILLADDILLFVEDKYCFLKNLRMALSLFEKALGLKINLAKSSLVSVNVPLNRAKECASSWGISCQTLPLSYLGVLLGGNP
KSKLFWRHIEDKIQKKLNNWKYAHISKGGKLTLIKSTLSSLPIYQLFRNFLSKGSSGSKGSHLVNWSKVTKPKKEGGLGIPKIQETNQALLTKWLWRYYMEPTAL

IVF0008076 (gene) of Melon (IVF77) v1 genome