CuGenDBv2

Gene ID	IVF0008081
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Replication termination factor 2
Genome location	chr12:11302577..11304518
RNA-Seq Expression	IVF0008081
Synteny	IVF0008081
Gene Ontology terms	GO:0000380 - alternative mRNA splicing, via spliceosome (biological process) GO:1902979 - mitotic DNA replication termination (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	IPR006735 - Replication termination factor 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035425.1 protein RTF2-like protein [Cucumis melo var. makuwa]

2.99e-72

84.89

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Query:  VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR-------------
        VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL              
Subjt:  VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR-------------

Query:  -------LYHINLMPFVDELTSSSVQSVEAEIDANKLAV
               LYHINLMPFVDELTSSSVQSVEAEIDANKLAV
Subjt:  -------LYHINLMPFVDELTSSSVQSVEAEIDANKLAV

XP_008444038.1 PREDICTED: protein RTF2 homolog [Cucumis melo]

9.17e-40

75.79

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Query:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL
        S +++ L +  + S YFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Subjt:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL

XP_011655923.1 replication termination factor 2 [Cucumis sativus]

1.09e-41

78.12

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Query:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR
        S +T+ L +  + SFYFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Subjt:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR

XP_022922055.1 protein RTF2 homolog [Cucurbita moschata]

2.49e-39

84.71

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Query:  SFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR
        SFYFTLNGKPLL STT   SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Subjt:  SFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR

XP_023516862.1 protein RTF2 homolog [Cucurbita pepo subsp. pepo]

2.49e-39

84.71

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Query:  SFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR
        SFYFTLNGKPLL STT   SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Subjt:  SFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTI5 Replication termination factor 2

1.0e-33

78.12

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Query:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR
        S +T+ L +  + SFYFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Subjt:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR

A0A1S3B9F3 Replication termination factor 2

3.3e-32

75.79

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Query:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL
        S +++ L +  + S YFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Subjt:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL

A0A5A7SWS4 Replication termination factor 2

3.3e-32

75.79

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Query:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL
        S +++ L +  + S YFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Subjt:  SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL

A0A5D3DPZ0 Protein RTF2-like protein

4.2e-56

84.89

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Query:  VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR-------------
        VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL              
Subjt:  VASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR-------------

Query:  -------LYHINLMPFVDELTSSSVQSVEAEIDANKLAV
               LYHINLMPFVDELTSSSVQSVEAEIDANKLAV
Subjt:  -------LYHINLMPFVDELTSSSVQSVEAEIDANKLAV

A0A6J1E7I8 Replication termination factor 2

7.2e-32

79.35

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Query:  LPTVASLSFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR
        +P     SFYFTLNGKPLL STT   SLIPP  TLILRTRVL GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Subjt:  LPTVASLSFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58020.1 unknown protein

3.2e-24

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Query:  SPVTKHLPTVASLSF---YFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL
        S +T  L +   +SF     TL+GK L GST    S +P    L L  R+  GGGDGGATGAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Subjt:  SPVTKHLPTVASLSF---YFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL

Sequences

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CDS sequence

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ATGACTTCACCTGTGACCAAGCACCTACCAACGGTTGCATCATTGTCTTTCTACTTTACCCTCAATGGGAAACCCCTTCTCGGTTCCACTACGTTTTCTCTTATTCCTCC
TTTTTTCACCTTAATCTTAAGAACCAGGGTCCTTAGAGGTGGTGGCGATGGCGGTGCAACAGGGGCTGAGTCGCATGACTGCTACCTTAGTATGTACGCAGAGAAGAAAC
CCGTTAAGGCCGACCCTGACGAGCAGAGGTTGTCCAAGTGGGTGAATTGTGCACTTTCTAACGAGCCTTTGAGGCTTTATCACATTAATCTGATGCCATTTGTGGATGAG
TTAACATCTAGCAGTGTGCAGTCTGTGGAAGCTGAGATTGATGCTAACAAATTGGCGGTTCGAACTTGCTCAGCAAAGATACAAGCTCTTTTAGGTGAGAATTAG

mRNA sequence

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Protein sequence

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MTSPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLRLYHINLMPFVDE
LTSSSVQSVEAEIDANKLAVRTCSAKIQALLGEN

IVF0008081 (gene) of Melon (IVF77) v1 genome