CuGenDBv2

Gene ID	IVF0008091
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	chr03:1706108..1708902
RNA-Seq Expression	IVF0008091
Synteny	IVF0008091
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056571.1 general transcription factor 3C polypeptide 6-like [Cucumis melo var. makuwa]

1.31e-79

88.89

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS
        MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVEEEAQPS
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS

Query:  ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS
        ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS
Subjt:  ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]

2.03e-75

92.19

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EPKQAT
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDSDVPSPIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  RKELKATACVHKILKFKLLDSDVPSPIS

XP_016899393.1 PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]

5.83e-84

100

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDSDVPSPIS
        RKELKATACVHKILKFKLLDSDVPSPIS
Subjt:  RKELKATACVHKILKFKLLDSDVPSPIS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

3.18e-62

84.3

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKA IDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PSETN  S +A EP QA 
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDS
        RK+LK  A VHKILKFKLLDS
Subjt:  RKELKATACVHKILKFKLLDS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

8.88e-70

87.5

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKATIDSA + EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA+PSE+N  SREAAEPKQA 
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDSDVPSPIS
        RKELK  A VHKILKFKLLDS VP+ IS
Subjt:  RKELKATACVHKILKFKLLDSDVPSPIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

1.7e-56

91.41

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EP+QAT
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDSDVPSPIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  RKELKATACVHKILKFKLLDSDVPSPIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

1.9e-63

100

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDSDVPSPIS
        RKELKATACVHKILKFKLLDSDVPSPIS
Subjt:  RKELKATACVHKILKFKLLDSDVPSPIS

A0A5A7USU8 General transcription factor 3C polypeptide 6-like

2.5e-60

88.89

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS
        MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVEEEAQPS
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS

Query:  ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS
        ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS
Subjt:  ETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS

A0A6J1FF13 uncharacterized protein LOC111445121

2.1e-46

82.64

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKA IDSAS+ EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PSETN  S +A EP QA 
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDS
        R++LK  A VHKILKFKLLDS
Subjt:  RKELKATACVHKILKFKLLDS

A0A6J1JTZ1 uncharacterized protein LOC111489725

3.5e-46

82.64

Show/hide

Query:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT
        MEKA IDSAS+ EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PS+TN  S +A EP QA 
Subjt:  MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQAT

Query:  RKELKATACVHKILKFKLLDS
        RK+LK  A VHKILKFKLLDS
Subjt:  RKELKATACVHKILKFKLLDS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

9.9e-17

43.24

Show/hide

Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVH
        E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F+++                      + +   +K ++  A +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVH

Query:  KILKFKLLDSD
        KILKF+L   D
Subjt:  KILKFKLLDSD

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

4.7e-19

47.79

Show/hide

Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVH
        EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+E+E     E   P                 +K ++  A +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVH

Query:  KILKFKL--LDSD
        KILKF+L  LD+D
Subjt:  KILKFKL--LDSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAAAAGCTACAATTGACTCCGCCTCTAATGCCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATACGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGAGGAAG
TCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATGGTTGCTCGAGAGAAGCAGCTGAACCAAAACAAGCTACCAGAAAGGAGTTAAAGGCCACTGCCTGTGTA
CATAAGATCCTTAAATTTAAGTTACTTGATTCTGATGTTCCAAGCCCAATATCTTAG

mRNA sequence

Show/hide mRNA sequence

AGATATTATAGATAAAATATAAAACATAGAGAAACCCCATCGTTTTTCTTTACTCTTCACATGTTACGATTAGCGAGTCTCTAGAGGGTAACCCCCTCCTCCAAACCCCT
TCCAGTTCCCACCTTTCTACGAGCCTCACCCAACCCACCCTAAACGCATACGAACAAACAACACCTCCTCGCCTTTCCTCCTCCCACCGCCGCCCGCTTCTGCTCACCCC
TGCATCTGACGTTTGCCACCCCTTGCCGAGGCATCTCTAAGGAACATGGAAAAAGCTACAATTGACTCCGCCTCTAATGCCGAGGAAGAATATGTATTGCTTGACCTTGG
TGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAAT
ATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATGGTTGCTCGAGAGAAGCAGCTGAA
CCAAAACAAGCTACCAGAAAGGAGTTAAAGGCCACTGCCTGTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGATGTTCCAAGCCCAATATCTTAGTGCACTAA
AGAGAATAATGTTATTTCATATTTGTATATATTGAGGTGTAAGTTTTATGTATAGTTTAGATGCAATGGGACTGATAAGGTAAGAATTTAGATGAGTTGTGAGTACTCAT
CCAAGTAAAGAGCACAGTGAAAGAGCTATCCTCGTTGTTCAACTCATCAACCTCCAACCTCACTGTCTTTTATAGAATAGACCGGAGTGTTATCATGGAAG

Protein sequence

Show/hide protein sequence

MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACV
HKILKFKLLDSDVPSPIS

IVF0008091 (gene) of Melon (IVF77) v1 genome