; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008119 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008119
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr12:16405602..16405822
RNA-Seq ExpressionIVF0008119
SyntenyIVF0008119
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]4.12e-2368.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVYR---------------FDTFILMQGFHRNSYDACVY
        MDVT TFLHGELEEVIYMAQPKGY+VK KEDMVC +++               FDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVYR---------------FDTFILMQGFHRNSYDACVY
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]7.68e-2368.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]4.97e-2268.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT TFLHGELEEVIYMAQPKGY+VK KEDMV  ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]7.67e-2368.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]7.68e-2368.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
TrEMBL top hitse value%identityAlignment
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class1.8e-1868.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVYR---------------FDTFILMQGFHRNSYDACVY
        MDVT TFLHGELEEVIYMAQPKGY+VK KEDMVC +++               FDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVYR---------------FDTFILMQGFHRNSYDACVY
A0A5A7UB25 Putative gag-pol polyprotein3.1e-1868.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class1.6e-1768.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT TFLHGELEEVIYMAQPKGY+VK KEDMV  ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
A0A5D3CTV2 Putative polyprotein3.1e-1868.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
A0A5D3DNU1 Putative gag-pol polyprotein3.1e-1868.49Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
        MDVT  FLHGELEEVIYMAQPKGY+VK KEDMVC ++               RFDTFIL QGFHRNSYDACVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVY---------------RFDTFILMQGFHRNSYDACVY
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-0738.36Show/hide
Query:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLV---------------YRFDTFILMQGFHRNSYDACVY
        +DV   FLHG+LEE IYM QP+G++V  K+ MVC +                +FD+F+  Q + +   D CVY
Subjt:  MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLV---------------YRFDTFILMQGFHRNSYDACVY
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATAAGGTGAAGTGTAAGGAAGACATGGTTTGTCTGGTATA
TAGGTTTGATACTTTCATTCTAATGCAGGGATTCCACAGGAACTCATATGATGCTTGTGTTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATAAGGTGAAGTGTAAGGAAGACATGGTTTGTCTGGTATA
TAGGTTTGATACTTTCATTCTAATGCAGGGATTCCACAGGAACTCATATGATGCTTGTGTTTATTAG
Protein sequenceShow/hide protein sequence
MDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCLVYRFDTFILMQGFHRNSYDACVY