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IVF0008155 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008155
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr04:2845112..2847250
RNA-Seq ExpressionIVF0008155
SyntenyIVF0008155
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038783.1 uncharacterized protein E6C27_scaffold92G003370 [Cucumis melo var. makuwa]3.47e-1194.29Show/hide
Query:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
        MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Subjt:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
KGN60270.2 hypothetical protein Csa_001570 [Cucumis sativus]1.28e-3657.86Show/hide
Query:  MVEERAGKEIVELTNYPAV--VYC--PNPDMLPAFP------LPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMFH
        MVEERAGKEIVEL        ++C   +P  L   P      LPSN TVCR YFIL      +T+KHPR LLATSTET                    FH
Subjt:  MVEERAGKEIVELTNYPAV--VYC--PNPDMLPAFP------LPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMFH

Query:  SFCIGGRLIFCRGTRDRE-GNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS
        SFC+GG L FCR T DRE G  CTVGATI E MAVKG WLLMHPRVNVATSLGQSLLYS
Subjt:  SFCIGGRLIFCRGTRDRE-GNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS
TYK31403.1 uncharacterized protein E5676_scaffold455G007110 [Cucumis melo var. makuwa]3.47e-1194.29Show/hide
Query:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
        MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Subjt:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
TrEMBL top hitse value%identityAlignment
A0A0A0LGQ8 Uncharacterized protein9.2e-4057.78Show/hide
Query:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP-------------------------------LPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETG
        MVEERAGKEIVELTN PAVV CPNPDMLPA P                               LPSN TVCR YFIL      +T+KHPR LLATSTET 
Subjt:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP-------------------------------LPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETG

Query:  KFLTLSGSTKANWLQFIKMFHSFCIGGRLIFCRGTRDRE-GNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS
                           FHSFC+GG L FCR T DRE G  CTVGATI E MAVKG WLLMHPRVNVATSLGQSLLYS
Subjt:  KFLTLSGSTKANWLQFIKMFHSFCIGGRLIFCRGTRDRE-GNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS
A0A5A7T754 SWIM-type domain-containing protein1.3e-0994.29Show/hide
Query:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
        MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Subjt:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
A0A5D3E5J2 SWIM-type domain-containing protein1.3e-0994.29Show/hide
Query:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
        MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Subjt:  MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGGAGAGGGCGGGGAAGGAGATAGTCGAGCTCACAAACTATCCTGCTGTTGTCTACTGTCCAAACCCTGACATGCTGCCGGCTTTCCCACTGCCATCGAATAG
AACTGTTTGTCGTGGTTACTTCATTCTGTGTACGTGTTGCTTAAACTCGACGGTAAAACATCCACGAACCTTGTTGGCAACAAGCACAGAGACTGGTAAATTTTTAACAT
TATCAGGCAGTACGAAGGCAAATTGGCTACAGTTTATAAAAATGTTCCATTCTTTCTGTATCGGTGGCAGACTCATATTTTGCAGGGGCACTAGGGATCGTGAGGGAAAC
GCATGCACTGTGGGGGCTACCATTCCTGAGTGCATGGCAGTTAAAGGACCGTGGTTGTTGATGCATCCACGAGTCAATGTGGCAACTTCTTTAGGTCAGTCACTTCTCTA
CTCTACTGATTCATTTGATCTTAATGAAGCTCATATCATTTCAATCTATTTTGTTGATCAATATATAAATGAATATCATCTGAATTATTCCATCATTAATCTACTGTTAA
ATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGGAGAGGGCGGGGAAGGAGATAGTCGAGCTCACAAACTATCCTGCTGTTGTCTACTGTCCAAACCCTGACATGCTGCCGGCTTTCCCACTGCCATCGAATAG
AACTGTTTGTCGTGGTTACTTCATTCTGTGTACGTGTTGCTTAAACTCGACGGTAAAACATCCACGAACCTTGTTGGCAACAAGCACAGAGACTGGTAAATTTTTAACAT
TATCAGGCAGTACGAAGGCAAATTGGCTACAGTTTATAAAAATGTTCCATTCTTTCTGTATCGGTGGCAGACTCATATTTTGCAGGGGCACTAGGGATCGTGAGGGAAAC
GCATGCACTGTGGGGGCTACCATTCCTGAGTGCATGGCAGTTAAAGGACCGTGGTTGTTGATGCATCCACGAGTCAATGTGGCAACTTCTTTAGGTCAGTCACTTCTCTA
CTCTACTGATTCATTTGATCTTAATGAAGCTCATATCATTTCAATCTATTTTGTTGATCAATATATAAATGAATATCATCTGAATTATTCCATCATTAATCTACTGTTAA
ATTAA
Protein sequenceShow/hide protein sequence
MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMFHSFCIGGRLIFCRGTRDREGN
ACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYSTDSFDLNEAHIISIYFVDQYINEYHLNYSIINLLLN