; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008206 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008206
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr08:28773248..28780790
RNA-Seq ExpressionIVF0008206
SyntenyIVF0008206
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.35e-3594.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCN EDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.28e-3494.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
KAA0065364.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.56e-3593.51Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQN
        L V  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQN
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQN
TYK20861.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.56e-3593.51Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQN
        L V  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQN
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQN
TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.34e-3494.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein1.0e-3094.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCN EDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein3.0e-3094.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
A0A5D3BI77 Retrovirus-related Pol polyprotein from transposon 17.65.7e-2991.03Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L +  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKM REKLCNLEDG GNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
A0A5D3BWE8 F15O4.133.0e-3094.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGT NEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
A0A5D3DRJ1 F15O4.133.0e-3094.87Show/hide
Query:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
        L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMAREKLCNLEDGTGNEKSVQNL
Subjt:  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTTATTTGTTGTCATAAAAGCTGTCAACCCTTGCTTTCCTCAAACCATCACGATAAACCTCACGCACGCCTCTCCACTTCCTTCAAACGTTGTCGGCCATGGGA
CGCACGAACTCCACCCTCTGCAAACGCCTCCAACCATCTCCATTTGATATCAGAGGACCGAACTCCACCCTTAAGTAATTCAAATGTCCGCTATCAGAGGAGTTTCGAGT
TCCAGCGGCCATTCAAGGATCCAATTGGCTATCCGTCCCTAGTGTTCCTCGGCCGCCGTCGGCAGCGTTTCGTCAGGTTTTGTGGCTTCTTTTGGAAAGTAGCCAGAATA
GACCACCCATGCAACCGAAATGATGAGACGACACTTTCATCTCTTTTGCTGCAATACCCACCCACGTTCCGTCTCACACGATTGTCATTCAACAGAAGACAACGTCGTCG
TGGTTTCTGTTTAATTGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAGGGTTCTTCGAGGACCAATCACAAAGCGCAAGGCAAAGAAGATAC
AAGAGGCTTTCACACTGCATGTTCAAAAATTGGCAAATGCACAACGAGAAACCAAGAATTTTGAACTCAAATTCTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGCAT
GGAGTCAAGATGGCACGGGAAAAGTTGTGTAATTTGGAAGATGGCACGGGGAACGAAAAAAGTGTGCAGAATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTTATTTGTTGTCATAAAAGCTGTCAACCCTTGCTTTCCTCAAACCATCACGATAAACCTCACGCACGCCTCTCCACTTCCTTCAAACGTTGTCGGCCATGGGA
CGCACGAACTCCACCCTCTGCAAACGCCTCCAACCATCTCCATTTGATATCAGAGGACCGAACTCCACCCTTAAGTAATTCAAATGTCCGCTATCAGAGGAGTTTCGAGT
TCCAGCGGCCATTCAAGGATCCAATTGGCTATCCGTCCCTAGTGTTCCTCGGCCGCCGTCGGCAGCGTTTCGTCAGGTTTTGTGGCTTCTTTTGGAAAGTAGCCAGAATA
GACCACCCATGCAACCGAAATGATGAGACGACACTTTCATCTCTTTTGCTGCAATACCCACCCACGTTCCGTCTCACACGATTGTCATTCAACAGAAGACAACGTCGTCG
TGGTTTCTGTTTAATTGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAGGGTTCTTCGAGGACCAATCACAAAGCGCAAGGCAAAGAAGATAC
AAGAGGCTTTCACACTGCATGTTCAAAAATTGGCAAATGCACAACGAGAAACCAAGAATTTTGAACTCAAATTCTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGCAT
GGAGTCAAGATGGCACGGGAAAAGTTGTGTAATTTGGAAGATGGCACGGGGAACGAAAAAAGTGTGCAGAATTTGTGA
Protein sequenceShow/hide protein sequence
MTVICCHKSCQPLLSSNHHDKPHARLSTSFKRCRPWDARTPPSANASNHLHLISEDRTPPLSNSNVRYQRSFEFQRPFKDPIGYPSLVFLGRRRQRFVRFCGFFWKVARI
DHPCNRNDETTLSSLLLQYPPTFRLTRLSFNRRQRRRGFCLIANAEALAPPSSTRVSLRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH
GVKMAREKLCNLEDGTGNEKSVQNL