CuGenDBv2

Gene ID	IVF0008211
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	signal recognition particle 19 kDa protein
Genome location	chr08:29653154..29654835
RNA-Seq Expression	IVF0008211
Synteny	IVF0008211
Gene Ontology terms	GO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process) GO:0048500 - signal recognition particle (cellular component) GO:0008312 - 7S RNA binding (molecular function)
InterPro domains	IPR036521 - Signal recognition particle, subunit SRP19-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]

2.24e-36

55.97

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

XP_004147903.1 signal recognition particle 19 kDa protein [Cucumis sativus]

4.64e-36

57.04

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTCVEIGDCCGHLKL                                     + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSS-TAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSS TAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSS-TAGPSKGNYGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]

3.17e-36

55.22

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQLMLR+
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

XP_022979984.1 signal recognition particle 19 kDa protein [Cucurbita maxima]

2.59e-35

55.97

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------GYIAG------KQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                            G ++       KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------GYIAG------KQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GR KKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]

2.24e-36

55.97

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5F9 Uncharacterized protein

7.6e-27

55.97

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein

9.9e-27

55.22

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQLMLR+
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein

4.1e-25

54.07

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MDGE+PNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL                                     + KQ+MLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSK-GNYGRKKK
        AE+VPRH GRTKKQEPASSSTAGPSK G  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSK-GNYGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein

6.4e-26

55.22

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-------------YDVFGYI-----------------AGKQLMLRI
        MDGEIPNIKRWV LYP+YINSKKTI             NPTC EIGDCC HLKL             +   G +                 + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-------------YDVFGYI-----------------AGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GR KKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein

4.9e-26

55.97

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-------------YDVFGYI-----------------AGKQLMLRI
        MDGEIPNIKRWV LYPIYINSKKTI             NPTC EIGDCC HLKL             +   G +                 + KQLMLRI
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-------------YDVFGYI-----------------AGKQLMLRI

Query:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK
        AE+VPRH GR KKQEPASSSTAGPSKG  GRKKK
Subjt:  AEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

SwissProt top hits

e value

%identity

Alignment

P49964 Signal recognition particle 19 kDa protein

2.5e-19

43.75

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Query:  NIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-----------YDVF-------------------GYIAGKQLMLRIAEVVPR
        +IK+W  +YP+Y+NSKKT+             +PTCVEI DCC HLK+            D F                        KQLM++IAE+VP+
Subjt:  NIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKL-----------YDVF-------------------GYIAGKQLMLRIAEVVPR

Query:  HLGRTKKQEPASSSTAGPSKGNYGRKKK
        H GRTKKQEPA+SSTAG SKG  G+KKK
Subjt:  HLGRTKKQEPASSSTAGPSKGNYGRKKK

Q943Z6 Signal recognition particle 19 kDa protein

2.7e-13

36.81

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MD    NIK+WV +YP+YINSKKT+             NP C+EI DCC HLKL                                     + K LM +I
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQE---------PASSSTAG-PSKGNYGRKKK
        AE+VPRH  R KKQE          A++ST+G  SK   G KKK
Subjt:  AEVVPRHLGRTKKQE---------PASSSTAG-PSKGNYGRKKK

Arabidopsis top hits

e value

%identity

Alignment

AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative

1.9e-14

36.81

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Query:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI
        MD    NIK+WV +YP+YINSKKT+             NP C+EI DCC HLKL                                     + K LM +I
Subjt:  MDGEIPNIKRWVALYPIYINSKKTI-------------NPTCVEIGDCCGHLKLYDVF------------------------------GYIAGKQLMLRI

Query:  AEVVPRHLGRTKKQE---------PASSSTAG-PSKGNYGRKKK
        AE+VPRH  R KKQE          A++ST+G  SK   G KKK
Subjt:  AEVVPRHLGRTKKQE---------PASSSTAG-PSKGNYGRKKK

Sequences

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CDS sequence

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ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGCACTGTATCCCATCTATATTAATTCAAAGAAGACGATTAATCCTACGTGTGTCGAGATTGGGGATTGCTGCGG
TCATCTCAAACTATATGATGTATTTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCAGAAGTTGTTCCTAGACATCTTGGAAGGACAAAGAAGCAGGAGCCTG
CATCATCATCAACTGCAGGACCTTCAAAAGGCAATTATGGAAGAAAGAAGAAATAG

mRNA sequence

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Protein sequence

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MDGEIPNIKRWVALYPIYINSKKTINPTCVEIGDCCGHLKLYDVFGYIAGKQLMLRIAEVVPRHLGRTKKQEPASSSTAGPSKGNYGRKKK

IVF0008211 (gene) of Melon (IVF77) v1 genome